Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g216 ATGGCTGCAGATTCTTTCGATGATGAGTGTGATTACCTCTTCAAGGCTGTTCTAATTGGGGACTCTGCAGTTGGAAAATCTAATCTTCTGTCCAGATTCTCCCGGGATGAATTCCGATTAGATTCCAAGCCCACCATCGGAGTCGAATTCGCTTACCGGAATATTAAGGTCGGAGACAAGCTCATCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAACGGTTTAGAGCCATCACAAGCTCATATTATCGTGGAGCTCTTGGTGCCCTATTAGTATACGACATAACACGACGTGCGACGTTTGAAAATTTGAAAAAATGGTTACGTGAGCTGAGAGATTTTGGTAAACCTGACATGGTGATTGTTCTAGTTGGAAATAAATCGGATTTAGGTCATTCTCGAGAAGTTGATGAGGAAGAAGGAAAAACCCTAGCAGAAACGGAAGGCTTATGCTTCATGGAAACATCGGCTTTAGAGAATTTGAATGTGGAAGAGGCATTTCTTCATATGATTACTAAAATCCATGAAGTTACTAGTCAAAAAAACTTAGAAGCAAAGCTCAATGAACCGGTCAAACCTCTTATAATTGGGAAAGAAATAATTCATGTTGATCATGAAGTATCTGCGACTAAACAATCAAGTTGTTGCTCAAGATGA 657 40.79 MAADSFDDECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENLKKWLRELRDFGKPDMVIVLVGNKSDLGHSREVDEEEGKTLAETEGLCFMETSALENLNVEEAFLHMITKIHEVTSQKNLEAKLNEPVKPLIIGKEIIHVDHEVSATKQSSCCSR* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2282058 2286605 + Vvi17g216 Vvi17g216 778913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g216 218 PANTHER RAS-RELATED PROTEIN RABA6B 1 217 - -
Vvi17g216 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 185 IPR027417 -
Vvi17g216 218 TIGRFAM small_GTP: small GTP-binding protein domain 13 167 IPR005225 GO:0005525
Vvi17g216 218 Gene3D - 6 216 IPR027417 -
Vvi17g216 218 SMART rab_sub_5 14 177 - -
Vvi17g216 218 SMART ran_sub_2 19 217 - -
Vvi17g216 218 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Vvi17g216 218 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Vvi17g216 218 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Vvi17g216 218 PANTHER DRAB11-RELATED 1 217 - -
Vvi17g216 218 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Vvi17g216 218 ProSiteProfiles small GTPase Ras family profile. 5 218 IPR001806 GO:0003924|GO:0005525
Vvi17g216 218 PRINTS Transforming protein P21 ras signature 14 35 - -
Vvi17g216 218 PRINTS Transforming protein P21 ras signature 37 53 - -
Vvi17g216 218 PRINTS Transforming protein P21 ras signature 55 77 - -
Vvi17g216 218 PRINTS Transforming protein P21 ras signature 117 130 - -
Vvi17g216 218 PRINTS Transforming protein P21 ras signature 152 174 - -
Vvi17g216 218 SMART ras_sub_4 11 177 - -
Vvi17g216 218 CDD Rab11_like 11 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g216 K07976 RAB; Rab family, other - vvi:100242285 434.106
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g216 . . . . . . Bma06g00065 . . . . . . Car11g00283 Sed14g1022 . Cpe04g01374 Bhi02g00132 Tan09g1830 Cmetu04g0229 . Hepe09g0382 . . Cla06g01425 Cam06g1579 Cec06g1639 Cco06g1631 . Cmu06g1495 Cre06g2304 Cone2ag0759 . . . . . . . . . . . . . . . . . Cmo11g00313 . . . . . . . . . . . . . . . . . . . . . Csa01g00428 Chy02g02316 Cme02g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012726 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28