Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g221 ATGAAGAACATTCTGAAGAAGCTCCATATTGTGTCGAATCAAACCGAAGACGTTGAAGGGTCTACTTCATCAAGGGGAAGCAAGACTCATGATGGGTCATCCCCAGATAGGCTTTTGCATTCTCGGCCCCATCATAATTCCGAGCATAAACCCTTTTCGGGTCTTTCGAATTGGTTGAATTCAGTTGCTAATAGACATAGCCCCAGTCCCCCATTATCTTCAAATGTCACAAGAGTAGAGAGATCAGAACCATCTGATTCCATGAGCAGTTGCGGTTTGGACGTCGTTTCAGATGCAGTGAGGCGTGACTCAGGGTCTAGCAATTCAAGGGATCCGGATATAGAGGAGGAGTATCAGATACAATTGGCCTTGGAGTTGAGTGCGAGGGAGGATCCTGAAGCAGTTCAGATTGAAGCCGTTAAGCAGATCAGTTTGGGCTCTTGTGCTCCAGAAAATACTCCAGCAGAAATTGTTGCTTATCGATACTGGAATTACAATGCTCTTAGCTATGATGACAAGATCTTGGATGGTTTTTACGACCTGTATGGAATTTTGATGGAGTCCACCTCACAAAAGATGCCTTCCCTTGTTGATCTACAAGGAACACCATTATCAGATTGTGTCACCTGGGAAGCAGTTTTGGTCAATAGAGCTGCTGATGCTAACCTGTTAAAACTTGAACAGGAGGCCCTGGTCATGGCCGTCAAGTCAAGGTCGGAATCTCCAGTTTTTGTAGGTAGTGATTTGGTGCAAAGGCTTGCTGCTTTAGTTGCTGCGAATATGGGTGGACCAGTTGGGGATCCAGTCAACATGTCAAGAGCGTGGCAAAGTCTCAGTTACAGTTTGAAAGCAACCCTTGGGAGCATGGTTTTGCCTCTTGGTTCTCTGACAATTGGATTGGCTCGCCATCGGGCATTGTTGTTCAAGGTTTTGGCTGATAGTGTGGGCATCCCATGCCGATTAGTGAAAGGACAGCAATATACAGGTTCTGATGATGTGGCAATGAACTTCGTGAAGATTGAAGATGGAAGGGAGTACATTGTTGATCTAATGGCAGATCCTGGAACACTTATTCCATCTGATGCAGCAGGATCGCATATAGAATATGATGATTCTATCTTTTCGGCCAGTACTTTGTCTAGAGAGATAGACTCCTCATATATAGCCTCTTCTAGCAGTGGGGTTGTGAGGCCATATCTGTCAGCTGTTGGAAATGAATCTGATGACAGAGGGGAACTTACGGCTTGTGCAAATCTACCCAGGCCAAGTAAAGATAGTTTGAATGCAGAGCAGACTCTGCTTCGGGCACTTCCCAGCAGGCCTAGCCATCCGTACATGCATGGAAGATCTCCCTCCTGGACAGAAGGTGTAAGCTCTCCAGCGGTGCGTAGAATGAAAGTGAAGGATGTTTCACAATATATGATTGATGCTGCCAAAGAAAATCCACAGTTGGCCCAGAAACTTCATGATGTGTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACCTATTCACTGAAATTTATCCCGAGCATATAGATGTGTCAATAGTTGAGGCCAAGTCCCCAACTGAAGATAAAGATGAAAATGAAAAGAGACCATCTGTTTCATCACAATCAGAGGTGAATCCTGTGAAATATCAGTATGAGAACTTGGAAACTGATGCAGATGGTGCTGGTTATGAGCCTCATGGTAGTGGTAACCGGGAGCATGATGCTTCTGGGACAAATCCTGAAGGAGAGAGAACATCGGATAGATCTGCGGATAGCACAAAATCAGATGTGGCACTTGATGATGTTGCAGACTGTGAGATCCCATGGGATGAAATCGCCTTGGGTGAGCGTATCGGACTTGGATCGTATGGGGAGGTATATCGTGGAGACTGGCATGGCACTGAAGTTGCTGTTAAGAAGTTCCTGGACCAAGATATTTCTGGTGAATCACTTGACGAATTCAGAAGTGAGGTGCGGATCATGAAAAGACTAAGGCATCCCAATGTTGTTCTCTTCATGGGAGCGGTAACTCGTGTCCCAAATCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGTTTGTATAGACTAATTCACCGGCCTAACAATCAATTAGATGAAAGGAGGCGTTTGAGGATGGCCCTTGATGCTGCTCGGGGAATGAATTATTTGCATAATTGCACTCCAGTAATAGTTCATCGTGATTTGAAGTCTCCAAACCTTCTTGTCGATAAGAATTGGGTTGTGAAGGTATGCGACTTTGGCTTATCACGAATGAAGCATAGTACTTTTCTTTCTTCCAGGTCAACTGCAGGGACGGCTGAGTGGATGGCTCCGGAAGTACTAAGAAATGAGCCTTCAGATGAAAAGTGTGATGTTTTCAGCTTTGGGGTCATATTATGGGAACTCTCTACATTACAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGATTCCAGCATCGCCGTCTTGACATTCCAGATGATATGGATCCTGTTGTGGCAGATATTATTAGGAGATGCTGGCACACAAATCCAAAAATGAGGCCTACATTTGCTGAAATCATGGCTACTCTGAAACCATTGCAAAAGCCTATAACCAGTTCACAAGTGCCTAGACCTAGTGCAGCAATAAGCAGTGGTCAGGAGAGGGTTCAACCATCACGAGCTGCAGAAGAACCAGCAGAATAA 2697 44.94 MKNILKKLHIVSNQTEDVEGSTSSRGSKTHDGSSPDRLLHSRPHHNSEHKPFSGLSNWLNSVANRHSPSPPLSSNVTRVERSEPSDSMSSCGLDVVSDAVRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAVQIEAVKQISLGSCAPENTPAEIVAYRYWNYNALSYDDKILDGFYDLYGILMESTSQKMPSLVDLQGTPLSDCVTWEAVLVNRAADANLLKLEQEALVMAVKSRSESPVFVGSDLVQRLAALVAANMGGPVGDPVNMSRAWQSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSVGIPCRLVKGQQYTGSDDVAMNFVKIEDGREYIVDLMADPGTLIPSDAAGSHIEYDDSIFSASTLSREIDSSYIASSSSGVVRPYLSAVGNESDDRGELTACANLPRPSKDSLNAEQTLLRALPSRPSHPYMHGRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPQLAQKLHDVLLESGVVAPPNLFTEIYPEHIDVSIVEAKSPTEDKDENEKRPSVSSQSEVNPVKYQYENLETDADGAGYEPHGSGNREHDASGTNPEGERTSDRSADSTKSDVALDDVADCEIPWDEIALGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGESLDEFRSEVRIMKRLRHPNVVLFMGAVTRVPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDMDPVVADIIRRCWHTNPKMRPTFAEIMATLKPLQKPITSSQVPRPSAAISSGQERVQPSRAAEEPAE* 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2321686 2342403 - Vvi17g221 Vvi17g221 778918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g221 898 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 582 896 - -
Vvi17g221 898 PRINTS Tyrosine kinase catalytic domain signature 722 740 IPR001245 GO:0004672|GO:0006468
Vvi17g221 898 PRINTS Tyrosine kinase catalytic domain signature 769 779 IPR001245 GO:0004672|GO:0006468
Vvi17g221 898 PRINTS Tyrosine kinase catalytic domain signature 788 810 IPR001245 GO:0004672|GO:0006468
Vvi17g221 898 PRINTS Tyrosine kinase catalytic domain signature 832 854 IPR001245 GO:0004672|GO:0006468
Vvi17g221 898 PRINTS Tyrosine kinase catalytic domain signature 683 696 IPR001245 GO:0004672|GO:0006468
Vvi17g221 898 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 518 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 8 29 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 520 594 - -
Vvi17g221 898 SUPERFAMILY Protein kinase-like (PK-like) 595 860 IPR011009 -
Vvi17g221 898 CDD STKc_MAP3K-like 615 861 - -
Vvi17g221 898 Pfam Protein tyrosine and serine/threonine kinase 610 861 IPR001245 GO:0004672|GO:0006468
Vvi17g221 898 Gene3D Phosphorylase Kinase; domain 1 602 686 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 30 49 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 563 594 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 866 888 - -
Vvi17g221 898 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 582 896 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 1 116 - -
Vvi17g221 898 ProSitePatterns Protein kinases ATP-binding region signature. 615 637 IPR017441 GO:0005524
Vvi17g221 898 MobiDBLite consensus disorder prediction 866 898 - -
Vvi17g221 898 Gene3D Transferase(Phosphotransferase) domain 1 688 872 - -
Vvi17g221 898 SMART serkin_6 609 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g221 898 ProSiteProfiles Protein kinase domain profile. 609 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g221 898 MobiDBLite consensus disorder prediction 520 534 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 50 92 - -
Vvi17g221 898 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 518 - -
Vvi17g221 898 MobiDBLite consensus disorder prediction 437 457 - -
Vvi17g221 898 Pfam Ethylene-responsive protein kinase Le-CTR1 155 358 - -
Vvi17g221 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76308 PF07714 PK_Tyr_Ser-Thr 1.20E-66 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g221 - - lsv:111877123 1094.34