Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g222 ATGGACCCAGCACCACCCCCACCGCTCCCTCCACCACCGCCACCTCAACCTCCGGCAGCCTCCGAGGCACACGTAGCTCATGCCGCCAACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAGAAAGCTATAGCGAAGTACATAGAAAGAACTTTCGGCGACTTGCCGCCGAGTCATCCGGCGTTGTTGACTCACCATCTAAAGAGATTGAGAAGCAGTGGTCAAGTTGTGATGGTGAAACACTCCTACATGCTCCCCAGATCTGGAGATGATGCTCACGCTCTCCCCCTTCATCCTGGGCCTGTCTCTGGGCCCAAGAGGGGTCGTGGCCGGCCCCCCAAGCCCAAGATCCCCGTCCAGCCCACTTCGGAGTCGGTGCTCGTGGCTGTGGGGTTGGTAGATGGGCCCGTGGTGCCGAAGAGGGGCCCTGGGCGTCCGCCTAAGTCTGGTGGTGTGCGTGGGCCGAGGCCCAAGTCGTTAGATGGACCCAAAAGGAGGCCTGGCCGTCCACCCAAGGCCCAGTTGGGTGGGGTGATTCCTGGCGGGGTGCCGAGGGAGCGGCCCAGGACGGCAGGTGTTACTAAGGTGAAGGTGTCCGGGAGGCCACGTGGTAGGCCGCCGAAGATTCTGACTGTTGGTGCCGGCGTCGGTGGAGGTCTCTCTGTGAAACGGCGGGGCCGGCCTCCTAAGGCTGACGGACCGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGAACAATGTGAGTGCGATGTCAGCATTACAGGAGTTGGAAGACCTGGCGACTATGGACATTAGTGCGCCACTAAATATCGAAGGTCAGCTGTTCTTTGGAAATTGA 1068 58.8 MDPAPPPPLPPPPPPQPPAASEAHVAHAANPTPSHGPPHNHPPYAEMITTAIGALNERTGSSKKAIAKYIERTFGDLPPSHPALLTHHLKRLRSSGQVVMVKHSYMLPRSGDDAHALPLHPGPVSGPKRGRGRPPKPKIPVQPTSESVLVAVGLVDGPVVPKRGPGRPPKSGGVRGPRPKSLDGPKRRPGRPPKAQLGGVIPGGVPRERPRTAGVTKVKVSGRPRGRPPKILTVGAGVGGGLSVKRRGRPPKADGPKRPKKLTGRPVGRPRKKLATGEILPAASEQPVAEWMNYEDLKQKLEHIQGKIKLSVGVLRTQFSENNVSAMSALQELEDLATMDISAPLNIEGQLFFGN* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2349563 2352147 - Vvi17g222 Vvi17g222 778919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g222 355 MobiDBLite consensus disorder prediction 157 272 - -
Vvi17g222 355 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g222 355 SMART AT_hook_2 222 234 IPR017956 GO:0003677
Vvi17g222 355 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vvi17g222 355 SMART AT_hook_2 244 256 IPR017956 GO:0003677
Vvi17g222 355 SMART AT_hook_2 264 276 IPR017956 GO:0003677
Vvi17g222 355 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Vvi17g222 355 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Vvi17g222 355 SMART h15plus2 38 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g222 355 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 40 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g222 355 MobiDBLite consensus disorder prediction 1 45 - -
Vvi17g222 355 MobiDBLite consensus disorder prediction 247 261 - -
Vvi17g222 355 CDD H15 41 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g222 355 Gene3D - 37 136 IPR036388 -
Vvi17g222 355 PRINTS AT-hook-like domain signature 128 138 IPR017956 GO:0003677
Vvi17g222 355 PRINTS AT-hook-like domain signature 160 171 IPR017956 GO:0003677
Vvi17g222 355 PRINTS AT-hook-like domain signature 220 230 IPR017956 GO:0003677
Vvi17g222 355 MobiDBLite consensus disorder prediction 111 145 - -
Vvi17g222 355 PANTHER HISTONE H1-LIKE 1 346 - -
Vvi17g222 355 SUPERFAMILY Winged helix DNA-binding domain 37 111 IPR036390 -
Vvi17g222 355 Pfam linker histone H1 and H5 family 41 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g222 355 PANTHER HISTONE H1 1 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g222 - - - vvi:100853898 616.305
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017234 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6