Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g224 ATGGGGAGTGGAACACTGGTGGATGGCGTTCGTCGCTGGTTTCAACGCCGCTCTTCAACCTCCTCCACTACCACCACCACCACCACCAACAATGACTCCAACAATGCCGCAATCCATGCTTCTTGTGTATTTGTGACCGAAGTCCACGCTCAATCCTCAGCTTCAGCCACACAGCCTCGTCCTCATCATAAAAAACGACAGCCACAAGACCCGGAAGCAGCCCCTGCTTTGACGCTCATCAAAGTCCCCAAACGACGACCCATGGATCCTCACAAGAAGGGCATGCCAGAAACAGAATTCTTCACAGAATATGGAGAGGCGAGCAGATACCAAGTCCAGGAAGTTGTTGGCAAAGGAAGTTATGGTGTTGTTGGCTCTGCAATTGATACCCACACTGGAGAAAAGGTTGCAATCAAGAAGATTAATGATGTCTTTGAACATGTCTCTGATGCTACACGGATTCTAAGAGAAATCAAGCTCTTACGGTTGCTTCGGCATCCGGATATTGTAGAAATAAAACATATCATGCTCCCGCCTTCTCGAAGAGAATTTAGAGATATTTACGTTGTTTTTGAATTGATGGAATCTGATCTTCATCAAGTAATTAAGGCAAACGATGATCTTACTCCCGAGCACTATCAATTTTTCTTGTACCAGCTTCTTCGGGGTCTAAAATATATACATACAGCAAATGTGTTTCATCGAGATTTGAAGCCAAAAAATATTCTTGCTAATGCCGACTGCAAGTTGAAGATTTGTGATTTTGGGCTTGCTCGGGTGTCATTCAATGATGCACCATCAGCTATTTTCTGGACAGACTATGTTGCAACCCGATGGTACCGTGCTCCTGAACTTTGTGGCTCCTTTTTCTCCAAGTACACTCCTGCGATTGATATTTGGAGCATAGGATGCATATTTGCAGAAATGCTTACAGGAAAACCGCTGTTTCCGGGGAAAAATGTAGTGCACCAGTTGGATCTCATGACTGATTTGCTTGGCACTCCTTCTGCTGAATCAATCGCAAGGATTCGGAATGAGAAGGCAAGAAGATATCTAAGTACCATGCGAAAAAAACCATCCATTCCCTTCTCACAAAAATTCCCTGATGCTGATCCGTTGGCTCTTCATCTAGTGGAACGTCTCCTTGCATTTGATCCTAAAGATCGTCCAACTGCTGAAGAGGCTTTAGCTGATCCGTATTTTGATGGTTTGGCAAATGTAGATCGTGAACCTTCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTAACAAAAGATGATGTTAGGGAGTTAATATATCGAGAGATCCTAGAGTATCATCCCCAGATGCTGCAGGAGTATCTTCGTGGTGGAGATCAAACTAGCTTCATGTACCCGAGTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCTAGAGAGCGGGTTTGTGCACCTATTAATGAGGCTGCTGATGAAAATAAGGAATTTGAAAAGCGTTCTGCTGCCTCTGTTGCTACAACTCTTGAGAGTCCTCCAAAAGCTGAGGGTTTAGAGAAAGGAAATGTAGAAAATGGACCCAGCAAGCCAAACCAAAGTGCTCGTAGCCTATTGAAGAGTGCTAGTATTAGTGCTTCCAAGTGTATAGGTGTGAAGGAACAAAAAGATGTTGAGGAGGAAACAATTGTCGAGCACGATGATGAGGGTGTCAATGGGTTATCCCACGACTTAGCAGCTCTCAATTCCTGA 1806 44.3 MGSGTLVDGVRRWFQRRSSTSSTTTTTTTNNDSNNAAIHASCVFVTEVHAQSSASATQPRPHHKKRQPQDPEAAPALTLIKVPKRRPMDPHKKGMPETEFFTEYGEASRYQVQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPSAESIARIRNEKARRYLSTMRKKPSIPFSQKFPDADPLALHLVERLLAFDPKDRPTAEEALADPYFDGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPINEAADENKEFEKRSAASVATTLESPPKAEGLEKGNVENGPSKPNQSARSLLKSASISASKCIGVKEQKDVEEETIVEHDDEGVNGLSHDLAALNS* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2368189 2377747 + Vvi17g224 Vvi17g224 778921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g224 601 Gene3D Phosphorylase Kinase; domain 1 126 447 - -
Vvi17g224 601 Pfam Protein kinase domain 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g224 601 ProSitePatterns MAP kinase signature. 145 248 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi17g224 601 SMART serkin_6 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g224 601 MobiDBLite consensus disorder prediction 480 601 - -
Vvi17g224 601 CDD STKc_TDY_MAPK 109 446 - -
Vvi17g224 601 Coils Coil 596 601 - -
Vvi17g224 601 MobiDBLite consensus disorder prediction 544 562 - -
Vvi17g224 601 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 71 527 - -
Vvi17g224 601 ProSitePatterns Protein kinases ATP-binding region signature. 116 140 IPR017441 GO:0005524
Vvi17g224 601 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 71 527 - -
Vvi17g224 601 SUPERFAMILY Protein kinase-like (PK-like) 106 406 IPR011009 -
Vvi17g224 601 MobiDBLite consensus disorder prediction 51 77 - -
Vvi17g224 601 ProSiteProfiles Protein kinase domain profile. 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g224 601 MobiDBLite consensus disorder prediction 14 34 - -
Vvi17g224 601 Gene3D Transferase(Phosphotransferase) domain 1 196 424 - -
Vvi17g224 601 MobiDBLite consensus disorder prediction 505 519 - -
Vvi17g224 601 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g426 Vvi17g224 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76309 PF00069 Pkinase 2.40E-68 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g224 - - vvi:100853858 1178.7