Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g225 ATGGAACATTGCCATCACCAACCACATGCGAAACGGACAATGCGACTCCGCTCTCCGCCTCTTCAACTCCATGCCTCGCCGGAGTTCGATTTCTTGGAACGCCATGATCTCCGTGGGTGTGTCCGGTATCGGAATCTACGGGCTGCGCGTTTGTTATTTGATCAAATGCCTGAAAGGGATGTCGTTTCGTGGAATGCGATGTTATCCGGTTATGCGCAGAATGGGTATGTGAAGGAGGCTAAGGAGATTTTTGATGAGATGCCATGTAAGAATTCAATATCTTGGAATGGAATGCTTGCAGCGTATGTGCAGAATGGACGGATAGAGGATGCGCGGAGGCTATTTGAGTCCAAAGCGGATTGGGAGTTGATTTCTTGGAACTGTATGATGGGTGGATATGTGAAGAGGAATAGGTTGGTTGATGCGAGGGGGATTTTTGATAGAATGCCAGAGAGGGATGAAGTTTCATGGAATACTATGATTTCGGGATATGCCCAGAATGGGGAGTTGTTGGAAGCACAGAGATTGTTTGAAGAGTCTCCAGTTCGGGATGTCTTCACTTGGACAGCAATGGTGTCAGGATATGTGCAGAATGGGATGTTGGATGAAGCAAGAAGAGTTTTTGATGGAATGCCGGAGAAGAATTCAGTTTCGTGGAATGCTATTATCGCAGGTTATGTGCAATGTAAGAGAATGGACCAGGCAAGGGAGTTGTTTGAGGCTATGCCTTGTCAGAATGTTTCTTCTTGGAATACAATGATTACTGGCTATGCACAGAATGGTGATATTGCTCAAGCTAGGAATTTTTTTGACAGGATGCCTCAGCGTGATTCCATCTCATGGGCAGCTATTATTGCTGGATATGCCCAAAGTGGCTATGGTGAAGAGGCTTTGCATCTATTTGTGGAGATGAAGAGAGATGGCGAAAGATTGAATAGGTCTACATTTACAAGTACTTTGAGCACATGTGCTGAGATAGCTGCTTTGGAATTGGGGAAGCAAGTACATGGACGGGTTGTAAAGGCAGGATTGGAAAGTGGGTGTTATGTGGGGAATGCACTTCTTGTAATGTATTGTAAGTGTGGAAACATAGACGATGCATACATTGTGTTTGAGGGAATTGAAGAAAAAGAAGTTGTGTCATGGAATACAATGATTGCTGGTTATGCAAGACATGGATTTGGCAAAGAGGCTCTGATGCTTTTTGAGTCAATGAAGAAAACCGGTATCCTACCAGATGATGTCACAATGGTTGGCGTTTTATCTGCATGTAGCCATACTGGCTTAGTAGACAAAGGCACAGAGTATTTTTATTCAATGACTCAAGATTATGGTATAACTGCAAATTCAAAACACTACACTTGCATGATTGATCTTCTGGGAAGAGCAGGGCGCCTGGATGATGCCCAAAATCTAATGAAGAACATGCCTTTTGAACCTGATGCTGCAACATGGGGTGCTTTACTTGGTGCTAGCAGGATTCATGGCAATACAGAGTTGGGTGAAAAGGCTGCTAAGATGATTTTTGAGATGGAACCTGATAATTCAGGAATGTATGTTCTTCTTTCAAACTTATATGCAGCTTCTGGGAGGTGGGGTGATGTTGGTAGGATGAGATTAAGAATGAGGGATAGAGGTGTGAAGAAAGTGCCCGGGTATAGTTGGGTTGAAGTGCAAAACAAGATTCACACATTTACAGTTGGGGATTCTGTTCACCCAGAGAGGGATAGGATATACACCTTTTTGGAAGAGTTGGATCTCAAGATGAAGAAGGAGGGTTATGTTTCTTCTACAAAGTTGGTTTTACATGACGTAGAAGAGGAGGAGAAGGTGCATATGCTCAAGTATCATAGTGAAAAACTAGCAGTTGCATTTGGAATACTGGCCATTCCTGCTGGAAGACCAATCCGTGTGATAAAGAATTTGCGGGTGTGTGAAGATTGTCACAATGCAATGAAACACATATCCAAGATTGTGGGAAGGTTGATAATCTTAAGGGATTCTCACCGCTTTCATCACTTTAATGGGGGTCAATGTTCTTGTGGGGACTATTGGTGA 2058 43.44 MEHCHHQPHAKRTMRLRSPPLQLHASPEFDFLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW* 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2379237 2381736 - Vvi17g225 Vvi17g225 778922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g225 685 Gene3D Tetratricopeptide repeat domain 332 431 IPR011990 GO:0005515
Vvi17g225 685 Gene3D Tetratricopeptide repeat domain 182 245 IPR011990 GO:0005515
Vvi17g225 685 Gene3D Tetratricopeptide repeat domain 120 181 IPR011990 GO:0005515
Vvi17g225 685 Gene3D Tetratricopeptide repeat domain 28 119 IPR011990 GO:0005515
Vvi17g225 685 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 43 674 - -
Vvi17g225 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Vvi17g225 685 Gene3D Tetratricopeptide repeat domain 441 619 IPR011990 GO:0005515
Vvi17g225 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 155 179 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 249 276 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 217 247 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 93 116 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 62 90 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 124 153 IPR002885 -
Vvi17g225 685 TIGRFAM PPR: pentatricopeptide repeat domain 186 215 IPR002885 -
Vvi17g225 685 Pfam DYW family of nucleic acid deaminases 593 685 IPR032867 GO:0008270
Vvi17g225 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 152 IPR002885 -
Vvi17g225 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vvi17g225 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Vvi17g225 685 PANTHER OS07G0578800 PROTEIN-RELATED 43 674 IPR045215 GO:0003723|GO:0009451
Vvi17g225 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 183 IPR002885 -
Vvi17g225 685 Pfam PPR repeat family 277 324 IPR002885 -
Vvi17g225 685 Pfam PPR repeat family 378 425 IPR002885 -
Vvi17g225 685 Pfam E motif 495 557 IPR046848 -
Vvi17g225 685 SUPERFAMILY TPR-like 132 279 IPR011990 GO:0005515
Vvi17g225 685 Pfam PPR repeat 452 476 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 62 90 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 217 244 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 249 276 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 124 152 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 155 179 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 352 377 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 93 116 IPR002885 -
Vvi17g225 685 Pfam PPR repeat 186 215 IPR002885 -
Vvi17g225 685 Gene3D Tetratricopeptide repeat domain 246 331 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g225 - - - vri:117904415 1313.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g225 . . . . . . . . . . . . . Car11g00280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008820 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 2 28