Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g226 ATGGAGGGCTGCCACCACCAGTCTTCCAGGCTGTTGATGATGGGGATATTGTTTCTGGCTGTGATTTTTCCGTCATCTTCTTCGCCGACTACACGTCGGTTTCAATTTAATGTTCAATGGAAGAAGGTAACCCGTCTGTGCCATACAAAGCCACTTCTTACAGTAAATGGGAAGTATCCAGGGCCAACCATTGCTGTTCATGAAGGTGACAATGTTGAAGTTAAGGTTACTAACCTTATTGCCACCAACACAACCATTCATTGGCATGGAATAAGGCAACTGAGGACAGGTTGGGCCGATGGTCCTGCTTACGTTACACAATGCCCCATCAGAGGAGGGCAGTCGTACACATACAAGTTCAGTGTGGTGGATCATAGGGGCACACTCCTGTGGCATGCTCATTACTCGTGGCAGCGGGTGTCCGTCTATGGCGCCTTCATCATCTATCCCCGCATGCCATATCCATTCAAAGCTCCTATTCAAGATGAAGTCCCCATTATATTTGGTGAATGGTGGAATGACGATGCGGAAGAAGTGGAAAGGGAGATGATGAGGACTGGAGATGGGCCCAAGATCTCAGAAGCTTACACCATTAATGGCATGCCTGGACCCCTCTATCCCTGCTCTAACAAAGATACTTTCATCCAGAATGTGGTTCCTGGCAAAACCTACTTGCTTCGTATCATCAATGCAGCACTCAACGCTGAGCTTTTCTTCGCCATTGCTAATCACACATTGACTGTCGTAGAGATTGATGGGTTGTACACAAAACCCTTTACGACCACAGCCATTATGATCGCTCCAGGACAAACCACCAATGTTCTGCTCACAGCGGATCAAGTTCCCGACTCTTCTGCCATGTTTCCCATGGCTGCAAACAATTATGTCACCTCCATTTTTCCATTCGATAATTCAACCACAATGGGCTTCTTACGCTACAAAACTATTACAAACCCAAGAGCTAAACCCCTAAACAGACCAGCTGTATACAGTCTCTCATCACTTTACAATCTTCCTCAAATGAAAGATACAGCTTTTGCCACTGGATTTTCGAGCAAGCTCCGAAGCCTTGCTTCTGCTCAGTACCCATGTAACGTGCCCAAGACTATTGATAAGCGAATAGTGACCACCATAAGCCTAAACCTTCAAGACTGTCCAGCCAATCAGACCTGCAAGGGCTACAACGGAAAGAGGTTCTTCGCTTCAATGAACAACCAGTCCTTTATTCGTCCTTTCGAATCCATACTAGAATGCCACTACAAAAACCTAACAAACCACTTGTTCTCATCCGATTTTCCCGAGAAACCACCAACCACTTTCGACTACACGGGCGTCAATCCGTTCACTTCAAACATGAACACCCAGTTTGGCACCAAGCTTTTGGTGGTTCCCTATGGCAGCAGCTTGGAAATTATTGAGACGTTGGTGATTTGCATAAGATTTAAATTTATTAATTTGGGATGTCGTTGGAACATTAAACTCGTCCTTCTGTTCTGA 1497 45.69 MEGCHHQSSRLLMMGILFLAVIFPSSSSPTTRRFQFNVQWKKVTRLCHTKPLLTVNGKYPGPTIAVHEGDNVEVKVTNLIATNTTIHWHGIRQLRTGWADGPAYVTQCPIRGGQSYTYKFSVVDHRGTLLWHAHYSWQRVSVYGAFIIYPRMPYPFKAPIQDEVPIIFGEWWNDDAEEVEREMMRTGDGPKISEAYTINGMPGPLYPCSNKDTFIQNVVPGKTYLLRIINAALNAELFFAIANHTLTVVEIDGLYTKPFTTTAIMIAPGQTTNVLLTADQVPDSSAMFPMAANNYVTSIFPFDNSTTMGFLRYKTITNPRAKPLNRPAVYSLSSLYNLPQMKDTAFATGFSSKLRSLASAQYPCNVPKTIDKRIVTTISLNLQDCPANQTCKGYNGKRFFASMNNQSFIRPFESILECHYKNLTNHLFSSDFPEKPPTTFDYTGVNPFTSNMNTQFGTKLLVVPYGSSLEIIETLVICIRFKFINLGCRWNIKLVLLF* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2388618 2393012 + Vvi17g226 Vvi17g226 778923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g226 498 CDD CuRO_1_LCC_plant 34 150 IPR034288 GO:0005507
Vvi17g226 498 CDD CuRO_2_LCC_plant 164 313 IPR034285 -
Vvi17g226 498 SUPERFAMILY Cupredoxins 161 359 IPR008972 -
Vvi17g226 498 Pfam Multicopper oxidase 37 151 IPR011707 GO:0005507
Vvi17g226 498 TIGRFAM laccase: laccase 31 472 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi17g226 498 Gene3D - 161 360 IPR008972 -
Vvi17g226 498 PANTHER MULTI-COPPER OXIDASE 8 472 IPR045087 -
Vvi17g226 498 PANTHER LACCASE-1 8 472 - -
Vvi17g226 498 SUPERFAMILY Cupredoxins 24 181 IPR008972 -
Vvi17g226 498 Pfam Multicopper oxidase 163 314 IPR001117 -
Vvi17g226 498 Gene3D - 21 150 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g226 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100853765 978.393
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00705 Chy12g01406 Cme12g01841 . . . . . Bpe15g00517 . . . . . . Cma18g00063 . Car18g00055 Cpe09g01121 . . . . . . . . Cla04g01057 Cam04g1099 Cec01g1614 Cco01g1659 Clacu04g1124 Cmu04g1108 Cre01g1408 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484