Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g227 ATGTCCCAAGCTCTTCTCCTTCTCGTCTTTTGCTTTCTTCTGCCAATCTTTCAGGCACTGCCGGAGCCAGACCCAGTTAAGATCCATCCGTTCCACCCAAACCCATCTCCGCCGGAGACCATTCCGGCGTTCCCCGAGCAGTCCGACGTCGCCGGCTGCCCGCTCAACCTCCCGGACGAGCTCTTCCACGGGATAAAGACCGCCTGCAGCGCGGGGAAAGGGGCGTCCGGGGAGCTACGACGGAGCCGGTGCTGCCCGGTCCTGGCGGCCTGGCTGTACTCCGCGTACTCGGGGACTGCGCTGGGGAGGGCAAAGAGGGGGTTGGCTCCCGAAGCGACGCCGTACGACCTGCCGTTGTTGCCCGACGATTCGGAGACGTGTGTGAATGACTTGGAAAAATCTCTGAAGAGCAGAGGCGTGGAATTGGTGAAGCCAAACGAGACTTGCGATGTTGTGTACTGCTTCTGTGGCATTCGGCTTCACCCCCTGAGTTGCCCGGAGGCGTTCTCAGTGTCGTCCAAAGGCAAGCTCGTCGGGGACGAGAGTGTGAAGAAATTAGAAAGAGATTGCCTGAGCACCAATGGATTTCCAGGCCTTGGCGGCTGTTCCAAATGCTTGAACACCCTCTACCTGCTTGGTAAGGACAAAACTGGGAATTCAAGCAAATTGGAGGCCAGATCACGTAAGATGCACAACAGGGACTGCGAGCTCATGGGTCTGACGTGGCTCCTCGCCAAGAACCGAACCGCCTACATCCACACAGTCTCAGCCGTCTTAAGAGCCATCATGATGAGCACCGACGGCTCTGATCCTCTGTCGTGCACTCTCAACAGTGACGGAATGCCCCTGGCCGTTGATTCCGCTGAAATTTCTTCTCACTCCTCGTCAACCTCCCTCCATTTCTCCATCCATCTCTGCATCTTATCCCTCTCTTTCCTGTACGCTCACCTCGCTGTATCATTCCCCGAGGCCTCCCTTTGTCAACGAGGGTACTACCATGAAAAAATTGAGAAGAAGATAGTGTTAAATTATTTTATATTTTTAACTTTAATTTGTCTTAAAAGTTATTGGTTGAAGAAGATATTATTTTTGTACTATAGCTTGTATATTCGATCGAATTTTTGA 1125 53.07 MSQALLLLVFCFLLPIFQALPEPDPVKIHPFHPNPSPPETIPAFPEQSDVAGCPLNLPDELFHGIKTACSAGKGASGELRRSRCCPVLAAWLYSAYSGTALGRAKRGLAPEATPYDLPLLPDDSETCVNDLEKSLKSRGVELVKPNETCDVVYCFCGIRLHPLSCPEAFSVSSKGKLVGDESVKKLERDCLSTNGFPGLGGCSKCLNTLYLLGKDKTGNSSKLEARSRKMHNRDCELMGLTWLLAKNRTAYIHTVSAVLRAIMMSTDGSDPLSCTLNSDGMPLAVDSAEISSHSSSTSLHFSIHLCILSLSFLYAHLAVSFPEASLCQRGYYHEKIEKKIVLNYFIFLTLICLKSYWLKKILFLYYSLYIRSNF* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2401129 2403917 + Vvi17g227 Vvi17g227 778924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g227 374 Pfam SPARK 51 220 IPR043891 -
Vvi17g227 374 PANTHER GPI-ANCHORED PROTEIN 4 315 IPR040376 -
Vvi17g227 374 PANTHER PROTEIN, PUTATIVE-RELATED 4 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g227 - - - vvi:100853697 649.047
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g227 . . . Bda15g00507 Bpe12g00702 . . . . . . . Car10g00304 Car11g00278 Sed08g0393 . Cpe04g01379 Bhi02g00126 Tan09g1838 Cmetu02g0013 . Hepe09g0378 . . Cla06g01430 Cam06g1584 Cec06g1644 Cco06g1636 Clacu06g1545 Cmu06g1500 Cre06g2309 . . . Cone19ag0326 . . . . . . . . . . . Bma08g00049 . Cmo10g00348 Cmo11g00307 . . . . . . . . . . . . . . . . . . . . Lsi06g01297 Csa01g00423 Chy02g02321 Cme02g01694
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005743 2 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 3 1 1 1 1 1 1 2 1 1 39