Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g232 ATGCCAGAGCTCTCTGAAACCTACGCCTGCGTGCCGTCCACGGAGCGCGGCCGAGGCATTCTCATCTCCGGCGATCCCAAATCCAATGCCATTCTCTATACCAACGGTAGATCCGTCATCATCCGCTACCTCCATAAGCCTCTCGAGGTCTCCATCTATGGAGAGCACGCGTATCAGGCTACCGTGGCGCGTTTCTCCCCCAACGGCGAGTGGATCGCATCAGCGGACGTCTCAGGAACGGTTAGGATTTGGGGGACGCACAATGATCATGTGCTGAAGAAGGAGTTTAGGGTTTTGTCTGGTCGGATCGATGATCTTCAATGGTCAGCGGATGGGATGAGGATCGTGGTGTCTGGTGACGGCAAGGGCAAGTCGTTTGTTCGCGCTTTTATGTGGGACTCAGGCAGTAATGTGGGGGAGTTTGATGGCCATTCAAAGCGAGTTCTTAGCTGTGCATTTAAGCCAACCAGACCATTTCGCATAGTCACATGTGGAGAGGACTTTCTAGTGAACTTCTACGAAGGACCACCTTTTAAATTCAAGCAATCCCACAGGCATCATTCAAATTTTGTCAACTGTATAAGGTATTCTCCAGATGGGAGCAAGTTCATCAGTGTAAGTTCTGATAAGAAGGGTGTGATTTATGATGGAAAAACCGGAGAGAAGATTGGAGAGCTATCCTCTGAAGATGGTCATAAAGGCAGCATCTATGCTGTCAGCTGGAGTCCTGATAGTAAACAAGTGTTGACTGTGTCTGCTGACAAGTCTGCAAAAGTATGGGAGATCTCTGAGGATGGTAATGGAAAGGTGAAGAAAACTTTAACTTGTCCCGGCTCAGGAGGAGTGGAAGACATGTTAGTGGGGTGTCTTTGGCAAAATGATCATCTTGTCACGATTTCTCTTGGTGGCACAGTCAGTATATTCTCAGCAAGTGATCTGGATAAAGGCCCATTATCGTTCTCTGGACACATGAAGAATGTTAATTCACTAGCAGTACTCAAAAGCAATCCCAAAGTTATGTTGTCCACCAGCTATGATGGTTTAATAATTAAATGGATTCAAGGAATTGGATATAGCGGAAGATTGGATAGGAAAGAGAATTCTCAAATCAAGTGTTTTGCAGCAGTTGAAGAAGAGATTGTTTCATCTGGATTTGACAACAAGATTTGGAGAGTTTCTCTACAAGGGGATCAATGTGGGGATGCAGATTGCGTTGATATTGGCAGTCAACCAAAGGACTTGAGCCTTTCCCTTCTTTCTCCTGAACTGGCACTGGTTTCAACTGATTCAGGAGTTGTTATTCTCCGTGGTACAAATGTAGTATCGACCATTAACCTTGGGTTTCCTGTGGCCGCATCTGTAATCTCACCTGATGGAAGTGAAGCTATAATAGGTGGGCAGGATGGCAAATTACACATATATTCTGTCACAGGTGATACTTTAAAAGAAGAGGCAGTACTTGAGAAACATCGTGGTGCAATTACTGTTATACGTTATTCCCCAGATGTTTCTATGTTTGCATCAGGAGATGCCAATCGAGAAGCTGTTGTCTGGGACCGTGCTTCCAGAGAGGTGAGGGTTAAGAACATGTTGTACCATACTGCCCGCATAAATTGCCTGGCCTGGTCTCCTGATAACAGCATGGTAGCTACTGGGTCACTCGACACATGTGTCATCATATATGAGATTGACAAGCCAGCATCCAGCCGTGTCACCATAAAGGGAGCCCACTTGGGTGGGGTTTATGGTTTAGCATTTACTGATGATACCAGTGTGGTGAGTTCTGGCGAAGATGCTTGTGTTCGAGTTTGGAAGTTAACCCCACAATAG 1830 46.01 MPELSETYACVPSTERGRGILISGDPKSNAILYTNGRSVIIRYLHKPLEVSIYGEHAYQATVARFSPNGEWIASADVSGTVRIWGTHNDHVLKKEFRVLSGRIDDLQWSADGMRIVVSGDGKGKSFVRAFMWDSGSNVGEFDGHSKRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKQSHRHHSNFVNCIRYSPDGSKFISVSSDKKGVIYDGKTGEKIGELSSEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWEISEDGNGKVKKTLTCPGSGGVEDMLVGCLWQNDHLVTISLGGTVSIFSASDLDKGPLSFSGHMKNVNSLAVLKSNPKVMLSTSYDGLIIKWIQGIGYSGRLDRKENSQIKCFAAVEEEIVSSGFDNKIWRVSLQGDQCGDADCVDIGSQPKDLSLSLLSPELALVSTDSGVVILRGTNVVSTINLGFPVAASVISPDGSEAIIGGQDGKLHIYSVTGDTLKEEAVLEKHRGAITVIRYSPDVSMFASGDANREAVVWDRASREVRVKNMLYHTARINCLAWSPDNSMVATGSLDTCVIIYEIDKPASSRVTIKGAHLGGVYGLAFTDDTSVVSSGEDACVRVWKLTPQ* 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2475547 2490062 + Vvi17g232 Vvi17g232 778929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g232 609 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Vvi17g232 609 Pfam WD domain, G-beta repeat 226 260 IPR001680 GO:0005515
Vvi17g232 609 Pfam WD domain, G-beta repeat 135 172 IPR001680 GO:0005515
Vvi17g232 609 Pfam WD domain, G-beta repeat 575 605 IPR001680 GO:0005515
Vvi17g232 609 Pfam WD domain, G-beta repeat 63 84 IPR001680 GO:0005515
Vvi17g232 609 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 263 IPR001680 GO:0005515
Vvi17g232 609 CDD WD40 56 352 - -
Vvi17g232 609 SUPERFAMILY WD40 repeat-like 26 352 IPR036322 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Vvi17g232 609 PANTHER ACTIN-INTERACTING PROTEIN 1-1 1 609 - -
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 564 - -
Vvi17g232 609 SMART WD40_4 566 605 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 313 353 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 219 261 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 437 475 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 524 562 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 267 309 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 480 519 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 46 85 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 134 174 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 89 133 IPR001680 GO:0005515
Vvi17g232 609 SMART WD40_4 177 216 IPR001680 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
Vvi17g232 609 SUPERFAMILY WD40 repeat-like 319 606 IPR036322 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vvi17g232 609 Gene3D - 11 337 IPR015943 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 609 IPR001680 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Vvi17g232 609 Gene3D - 7 605 IPR015943 GO:0005515
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 263 - -
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Vvi17g232 609 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Vvi17g232 609 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 609 - -
Vvi17g232 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 571 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g232 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - vvi:100266198 1224.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37