Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g234 ATGCTGGAAAAAGGGTTGGAATCGATGCGTATTCATGGCTTCACAAAGGAGCTTATTCATGTAGCATGGAGATTTGTCTTAATTCGAAAGGCGATAAAAAATCGCGGTACTTACAGTACTTTATGCACCGAATCGATCTGCTTCGACACTACAAGATCACTCCTGTTGTTGTTTTTGACGGTGGGAACATCCCGTGTAAGGCTACCACCGAGCAGGAGCGATACAGGCATAAAATCTTATTGCGATTTGGCAATGGCAAAGCTCAAAGAAGGTGATGTAACTGGCGCTTCTGAGCTCTTCCAGAGAGCAGTGACCATCACTCCATCCATGGCACATCAACTCATTCAGATTCTGAGAACAGAGAACATTGAATTTGTAGTTGCTCCTTATGAGGCTGATGCTCAATTGGCTTACTTGTCAAACCTTGAGGCAGATAAGGGTGGGATTGCGGCAGTGATCACGGAGGATAGTGATCTAATGGCCTATGGGTGCCGAGCTATCATATTTAAGATGGATCGCTATGGGAATGGCGAAGAGATGGTGCTGGACAGGGTTTTTGATTCTGTGGCTCGTGCACCTTCCTTTCAAAATTTTGATAAAGAATTGTTCACAGGCATGTGTGTACTAGCTGGCTGTGATTTCCTCCCATCTGTTCCTGGAATTGGGATTGCAAGAGCTTATTCCATGGTTGCCAAGTATCGGAATTTAGACCGTGTTCTATCAGTTTTGAAATTTGAGAAGCGCAATCAAATGCCTGAAGATTACACAAAATCTTTCAGAGAAGCAGTTGCAGTCTTCCAGCATGCCAGAATATATGATGCTGACACTAAAAGAGTCCAACACATGAAACCTCTTACAGATGATCTTTTGCAGTCTCTTGATGGAGAGCTTGATTTCCTTGGACCAGAAATACCTCCATCAATAGCAACTGCAATTGCTGAAGGAAACTTGGACCCAGTAACCATGGAGGCTTTTGATCATTTCTCAAGTCATGAAAGTCAGCCGGAGCCTACAGTCACCCAGACTTCTAATGAAATTGTGAAGCCTGAGGCCACTGCACAATCTACAGAAGAGAGCTGCTTCACAATATTTTCCTCTCATGAAACCAGAGAAGAAAGGGTTACAGGCAAGTCTAGGCCAGTCATAGAGGAAACAAAGTACTTGAATGAAGCTGTGGCACTTCAAAAAATAATGTTCCCATCAGAAGTTCATGGCATGCTGGAAAATAAAATCACTCAGGATGAAACACCGTTAGAGATTCCTGACAACAACCCATTCAAGAAAAGGAAACTTAATGAAATCTACTTGGATCAGATACCAAGCATCACCGAGCAAATATCAGTGGTGGTTGATGTTGATAATTCAGATATCATGTGTGTGACTTTGGAATCTCAAGAGAGTGTGGACTCAAAGCCTAACAAAGTTGCTGATAGGAAAGCAATTAGTAAAAATGAGAAGCGAAAGAGAAGTGATTGCAAGAGTTCAGAGAGTAAGAAAAACAGTATACTGAATTTCTTTTCTCGTGTGTAA 1530 42.29 MLEKGLESMRIHGFTKELIHVAWRFVLIRKAIKNRGTYSTLCTESICFDTTRSLLLLFLTVGTSRVRLPPSRSDTGIKSYCDLAMAKLKEGDVTGASELFQRAVTITPSMAHQLIQILRTENIEFVVAPYEADAQLAYLSNLEADKGGIAAVITEDSDLMAYGCRAIIFKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHARIYDADTKRVQHMKPLTDDLLQSLDGELDFLGPEIPPSIATAIAEGNLDPVTMEAFDHFSSHESQPEPTVTQTSNEIVKPEATAQSTEESCFTIFSSHETREERVTGKSRPVIEETKYLNEAVALQKIMFPSEVHGMLENKITQDETPLEIPDNNPFKKRKLNEIYLDQIPSITEQISVVVDVDNSDIMCVTLESQESVDSKPNKVADRKAISKNEKRKRSDCKSSESKKNSILNFFSRV* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2499559 2504322 - Vvi17g234 Vvi17g234 778931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g234 509 SMART HhH_4 200 233 IPR008918 GO:0003677|GO:0003824
Vvi17g234 509 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 78 505 IPR006084 -
Vvi17g234 509 MobiDBLite consensus disorder prediction 470 496 - -
Vvi17g234 509 MobiDBLite consensus disorder prediction 468 500 - -
Vvi17g234 509 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Vvi17g234 509 CDD H3TH_FEN1-like 201 273 - -
Vvi17g234 509 ProSitePatterns XPG protein signature 2. 122 136 IPR019974 GO:0016788
Vvi17g234 509 Pfam XPG I-region 122 213 IPR006086 GO:0004518
Vvi17g234 509 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 78 505 - -
Vvi17g234 509 Gene3D - 196 269 - -
Vvi17g234 509 SMART xpgineu 119 195 IPR006086 GO:0004518
Vvi17g234 509 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 118 135 IPR006084 -
Vvi17g234 509 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vvi17g234 509 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 334 IPR036279 -
Vvi17g234 509 Gene3D - 72 189 - -
Vvi17g234 509 SUPERFAMILY PIN domain-like 81 213 IPR029060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g234 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - vvi:100262876 834.328
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30