Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g236 ATGGCTTCTCAGAGTGGAGAAAGTGATGACGACAATGATTCCGCCCTCGATGAAGATTTGGAAGCCCTAAGAAGGGCTTGTATTCTAACCGGCTCAAACCTTAATGATCGCGCCACTTCCTCCGGCGTCGCTGCCACCTCCGGTGCCGCCTCCGATGCCGACTCTGAAGGTATTGACGATCTCGAGTTGGTTCGAAACATTCAGAAGCGGTTCTCAATTCCGTCCGAGGATGTGCCAGCCCCTCTCTCATTGAAGCCGCTCAGCTTTCTGCCTCCTGCGGTCTCGGACGAGGACGAGGACGACTTCGAGATCCTCCGTGCAATCCAGAAACGGTTCTCAGCGTACCATGAGGATACTCCGAAAAGTGGTGTGGATAACAATCTACAGAAAAAAGAAAAGGTCCTTGATTCTGGCAAGCAGCAGGTGGATTCTGAAGATGCTAGTAACTCCACTCTGAATTTGGAATCCTTTGGTAGTAAGGTTCCTGAGAACCATAGCTCTAGACTAGGTGCTAGCAATTTTCCCCCTTTGCTGTCCAAGCAAACTAGCTTTCCAAAGTTGGGGCACATGTTTGTTGATGCTCTTAAGAAGAACAGATCTTGTCAGAGATTTCTCCGAAGCAAGCTGATTGAGCTTGAAGCCAGGCTTGAGGAGAACAAGAAGTTGAAGGAACGTGTTAAAATCCTTAAGGATTTTCAAGTTTCTTGTAGAAGAAGAATGGGACGGGCTTTGTCCCAGAAGAAGGATGCACGTGTCCAATTAATTTCTCTTCCGAAGTTAAAGGCTTCTAAGAACTCCAAGGTCAATGATAAAAAAGTCTCAGCTATTTACTATGGCCCTGCAGAGAATGCACATGTTGCTAACTATAGGATGGCATTAACAGAATTTCCACTCTCATTCACTCGGGCAAAGTGGTCAAAGTTAGAAATGCAAAATCTTGTGAAGGGAATAAAACAGCAGTTTCAAGAAATGCTGCTTCAGAAATCAGTGGATATGTTCAGTGGCTCTGAAAGATCTTTTGAAGATCCAAATGATTTTGATAACATTATGGGATCGATCACTGATCTTGAAATCCCCCCAGAAAACATTCGATTATTTTTGCCTAAAGTGAATTGGGAGCAGTTAGCATCTATGTATGTCGCCGGTCGATCTGCTGCAGAATGTGAAGCAAGGTGGTTGAACTGTGAAGACCCCTTAATCAATCACGATCCATGGAATGTTACAGAGGATAAGAAACTCTTATTTATTTTGCAGCAAAGGGGGCTCAATAGCTGGATTGATATTGCAGTATCACTAAGGACAAACAGGACACCATTTCAGTGCTTGGCACGTTATCAACGGAGTCTTAATGCTTGCATACTGAAAAGGGAATGGACTGTTGATGAGGATGCTCAACTTCGTACTGCTGTAGAAGATTTTGGCGAGGGTAATTGGCAGCTTATAGCTTCTGTTTTGCAAGGACGGACAGGCACCCAATGCTCTAACAGATGGAAAAAGACTCTTCACCCAGCCAGGCATAGGGTGGGAAGATGGACAGCGGATGAAGACAAGCGCTTGAAGGTAGCCGTGATGCTCTTTGGGCCTAAGACATGGACAAAAATAGCTGAATTTGTGCTCGGTCGAACTCAAGTGCAATGTAGAGAAAGATGGGTAAACAGTTTAGATCCTTCCTTGAACTGGGGCCAATGGACTGGAGAGGAGGATGCAAAGTTGAAAGCAGCAATAATGGAACATGGTTATTGTTGGTCTAAGGTTGCTGCATGCATTCCTCCACGTACAGATAGTCAATGCCGGAGGAGATGGAAGGTGCTTTTTCCTCATGAAGTGCCTTTACTTCAAGCAGCCAGAAAGATACAAAAGGTTGCTCTGATATCAAACTTTGTTGATCGGGAGTCAGAACGACCTGCTCTTGGTCCTAAAGACTTTCTTCCAGTGCCAGAAATGGATTCTGTTTCTGAGCCCCAAAAGGATTCACAAAAAAGGAAGAGAAAATCAAAAGTGCAGCCAGAAACTGAGGGGGAAAACAATGCTGCTTCTCGGAATGTTCCAAAAAAGAAAAGATCCCAGAAGCCTCGAAATGGAGCTGAAACCAGTTCCAAGGAAGTCCCAGGAAATAGCAATGCCAATGAAGTTGACAAAGTTGGCGGGGATGATGCGAATTCAAAGAAGAGGAAAAGGGTTAGGAAGCCACAATCGAGGAAGGCTAAATGTTCTGAACCAATACAGGATCGTCCATCATCTGATTTGGATTCAGCAATGTTAGTGATAACTAATGGTGAAGAGGTTGGGGAATTTGCAATGCAAGGTTGTCCATCATCTGATATTGGTTCAGCGATGTTGATGATAACTAATGGTGAAGAGGTTGGGGAATTTGGTGGGCATGATATTACTGACAAGGGAGACTCTCTTGTATCACATTCAAAAAGGGTAAGTACTGTATCCCCTGAAAGTTTGGACCCCCGGATAATTGATGTTGATGGTATTGAGACCATTGGTGCGAATGATACTACCTCACGTAGGAAGAAAAGCACTCCCAAGAGGCATCCTAAAATGAACAAATGTGCTGAACAATCAGGGGAACACCAGGACTCTACCTTGAATGTGAATGGTGCAATGTCAAAAAAGATGAGAAGGGCTCCTAAGCGGCCTCTTAAAAGAAAAATGGGTGCTGATCAATCAGAGGAACACCAGGCATCATCATCTCATGTAGATTCGACATTTGATGGGAATAATGCTACCTCAAATATGAAGAAAAGAACTCCTAAGCTGCATCCCAGAAGGAGAATATATATTGAACAATCAGAAGAACACCAGGCTTCATCCGCTTGTCTGGAATCAATAACCAGTGGTCAAGCAGTTGGTACATCTGGTGGGGGCATTCTTATTGAGGAAAGGGCTCCAAAACCACAAATGCAAATATGTGTGGAAGCAACAGAGAATAGGCCTGATACTTCCTTACATGGAGATTCAAGAGCAACTGTCTGCCAGCAAGATAGGCCCAAAAGGGTTTTTCCTCAATGTCATATAATAGTTAGCCACAGCCACCAAAACCCTAATCGCCACAACCCGTATAAATACCTTCTTTCCTATAGGATTTCACTTCCCAGTAGTCGCCTCTCTCACGAAAACCCTAATCCGAGAGAAAGAGAGAGAGAGAGCTCGAAGATGGCCGAAACCCTAGTTCTCCGCGGTACGATGAGAGCCCACACCGATATGGTGACGGCCATCGCCACCCCAATTGACAACTCCGACATGATCGTCACTTCCTCACGAGACAAGTCCATCATCCTCTGGCACCTCACCAAGGATGACAAGACCTATGGCGTCCCCCGTCGCCGCCTTACCGGCCATTCCCATTTTGTTCAGGACGTTGTCCTCTCCTCCGACGGCCAGTTCGCTCTTTCCGGAAGCTGGGACGGTGAGCTCCGCCTCTGGGATCTCGCTGCCGGCACCTCCGCCCGTCGCTTCGTCGGTCACACCAAGGACGTCCTTTCCGTGGCTTTCTCTGTTGATAACCGCCAGATCGTGTCGGCTTCGCGTGACCGCACCATCAAGCTCTGGAACACTCTTGGTGAGTGCAAGTACACCATCCAGGACGCTGATGCACACTCCGATTGGGTGAGCTGCGTCCGATTCAGCCCTAACAACCTGCAGCCGACGATTGTGTCTGCCTCTTGGGATCGGACAGTGAAAGATGGAGTGATTCTTTTGTACTGGCTTTGCGCTGCTACGGAGCAGAGTATCAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATTTGAAGGTTGATCTCAAGACCGAGGCTGAAAAGAGCGAAGATACCACCACTACTGCCAAGAAGAAGGGAAAGATCATATATTGCACAAGCTTGAGCTGGAGCGCAGATGGAAGCACATTGTTTAGTGGGTACACGGATGGTGTAGTCAGAGTTTGGGGAATTGGCCGTTACTAG 3957 46.47 MASQSGESDDDNDSALDEDLEALRRACILTGSNLNDRATSSGVAATSGAASDADSEGIDDLELVRNIQKRFSIPSEDVPAPLSLKPLSFLPPAVSDEDEDDFEILRAIQKRFSAYHEDTPKSGVDNNLQKKEKVLDSGKQQVDSEDASNSTLNLESFGSKVPENHSSRLGASNFPPLLSKQTSFPKLGHMFVDALKKNRSCQRFLRSKLIELEARLEENKKLKERVKILKDFQVSCRRRMGRALSQKKDARVQLISLPKLKASKNSKVNDKKVSAIYYGPAENAHVANYRMALTEFPLSFTRAKWSKLEMQNLVKGIKQQFQEMLLQKSVDMFSGSERSFEDPNDFDNIMGSITDLEIPPENIRLFLPKVNWEQLASMYVAGRSAAECEARWLNCEDPLINHDPWNVTEDKKLLFILQQRGLNSWIDIAVSLRTNRTPFQCLARYQRSLNACILKREWTVDEDAQLRTAVEDFGEGNWQLIASVLQGRTGTQCSNRWKKTLHPARHRVGRWTADEDKRLKVAVMLFGPKTWTKIAEFVLGRTQVQCRERWVNSLDPSLNWGQWTGEEDAKLKAAIMEHGYCWSKVAACIPPRTDSQCRRRWKVLFPHEVPLLQAARKIQKVALISNFVDRESERPALGPKDFLPVPEMDSVSEPQKDSQKRKRKSKVQPETEGENNAASRNVPKKKRSQKPRNGAETSSKEVPGNSNANEVDKVGGDDANSKKRKRVRKPQSRKAKCSEPIQDRPSSDLDSAMLVITNGEEVGEFAMQGCPSSDIGSAMLMITNGEEVGEFGGHDITDKGDSLVSHSKRVSTVSPESLDPRIIDVDGIETIGANDTTSRRKKSTPKRHPKMNKCAEQSGEHQDSTLNVNGAMSKKMRRAPKRPLKRKMGADQSEEHQASSSHVDSTFDGNNATSNMKKRTPKLHPRRRIYIEQSEEHQASSACLESITSGQAVGTSGGGILIEERAPKPQMQICVEATENRPDTSLHGDSRATVCQQDRPKRVFPQCHIIVSHSHQNPNRHNPYKYLLSYRISLPSSRLSHENPNPRERERESSKMAETLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWHLTKDDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIQDADAHSDWVSCVRFSPNNLQPTIVSASWDRTVKDGVILLYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEDTTTTAKKKGKIIYCTSLSWSADGSTLFSGYTDGVVRVWGIGRY* 1319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2514164 2540954 + Vvi17g236 Vvi17g236 778933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g236 1318 MobiDBLite consensus disorder prediction 834 925 - -
Vvi17g236 1318 SMART WD40_4 1107 1146 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1279 1314 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1059 1099 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1149 1188 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1190 1252 IPR001680 GO:0005515
Vvi17g236 1318 MobiDBLite consensus disorder prediction 653 670 - -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1114 1155 IPR001680 GO:0005515
Vvi17g236 1318 SUPERFAMILY Homeodomain-like 378 450 IPR009057 -
Vvi17g236 1318 Gene3D - 454 503 - -
Vvi17g236 1318 Gene3D - 562 608 - -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 397 449 IPR001005 -
Vvi17g236 1318 SMART sant 454 503 IPR001005 -
Vvi17g236 1318 SMART sant 301 398 IPR001005 -
Vvi17g236 1318 SMART sant 401 451 IPR001005 -
Vvi17g236 1318 SMART sant 559 607 IPR001005 -
Vvi17g236 1318 SMART sant 507 556 IPR001005 -
Vvi17g236 1318 Gene3D - 400 449 - -
Vvi17g236 1318 Coils Coil 205 229 - -
Vvi17g236 1318 CDD SANT 563 605 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1114 1147 - -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1156 1188 IPR001680 GO:0005515
Vvi17g236 1318 SUPERFAMILY Homeodomain-like 505 601 IPR009057 -
Vvi17g236 1318 Pfam Myb-like DNA-binding domain 561 604 IPR001005 -
Vvi17g236 1318 Pfam Myb-like DNA-binding domain 509 552 IPR001005 -
Vvi17g236 1318 Pfam Myb-like DNA-binding domain 455 500 IPR001005 -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 141 174 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 34 48 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 894 918 - -
Vvi17g236 1318 Gene3D - 509 559 - -
Vvi17g236 1318 ProSitePatterns Trp-Asp (WD) repeats signature. 1133 1147 IPR019775 -
Vvi17g236 1318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 453 505 IPR017930 -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 503 554 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 555 605 IPR001005 -
Vvi17g236 1318 SUPERFAMILY Homeodomain-like 434 504 IPR009057 -
Vvi17g236 1318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 509 550 IPR017930 -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 455 501 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1066 1108 IPR001680 GO:0005515
Vvi17g236 1318 MobiDBLite consensus disorder prediction 34 57 - -
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1194 1231 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1154 1188 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1064 1098 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1110 1146 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1290 1313 IPR001680 GO:0005515
Vvi17g236 1318 CDD SANT 510 554 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1290 1318 IPR001680 GO:0005515
Vvi17g236 1318 SUPERFAMILY WD40 repeat-like 1059 1314 IPR036322 GO:0005515
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1066 1100 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 134 174 - -
Vvi17g236 1318 Gene3D - 1059 1231 IPR015943 GO:0005515
Vvi17g236 1318 Gene3D - 1233 1318 IPR015943 GO:0005515
Vvi17g236 1318 PRINTS G protein beta WD-40 repeat signature 1133 1147 IPR020472 -
Vvi17g236 1318 PRINTS G protein beta WD-40 repeat signature 1175 1189 IPR020472 -
Vvi17g236 1318 PRINTS G protein beta WD-40 repeat signature 1301 1315 IPR020472 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1282 1318 - -
Vvi17g236 1318 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 7 975 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 634 751 - -
Vvi17g236 1318 CDD SANT 457 501 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 555 609 IPR017930 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1156 1188 - -
Vvi17g236 1318 CDD WD40 1062 1313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g236 K09422 MYBP; transcription factor MYB, plant - vvi:100268025 1944.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g604 . 1 295 MYB-Related Transcription Factor Family AT1G09770 85.4 2.3e-145 513.5
Vvi14g605 . 1 314 MYB-Related Transcription Factor Family AT1G09770 59.2 5.5e-91 332.8
Vvi17g236 . 182 658 MYB-Related Transcription Factor Family AT3G18100 57.2 1.3e-151 533.9
Vvi17g236 . 182 658 MYB-Related Transcription Factor Family AT3G18100 57.2 1.3e-151 533.9
Vvi14g604 . 1 295 MYB-Related Transcription Factor Family AT1G09770 85.4 2.3e-145 513.5
Vvi14g605 . 1 314 MYB-Related Transcription Factor Family AT1G09770 59.2 5.5e-91 332.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14183 PF00249 Myb_DNA-binding 5.80E-12 CL0123 Vvi TF