Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g236 ATGGCTTCTCAGAGTGGAGAAAGTGATGACGACAATGATTCCGCCCTCGATGAAGATTTGGAAGCCCTAAGAAGGGCTTGTATTCTAACCGGCTCAAACCTTAATGATCGCGCCACTTCCTCCGGCGTCGCTGCCACCTCCGGTGCCGCCTCCGATGCCGACTCTGAAGGTATTGACGATCTCGAGTTGGTTCGAAACATTCAGAAGCGGTTCTCAATTCCGTCCGAGGATGTGCCAGCCCCTCTCTCATTGAAGCCGCTCAGCTTTCTGCCTCCTGCGGTCTCGGACGAGGACGAGGACGACTTCGAGATCCTCCGTGCAATCCAGAAACGGTTCTCAGCGTACCATGAGGATACTCCGAAAAGTGGTGTGGATAACAATCTACAGAAAAAAGAAAAGGTCCTTGATTCTGGCAAGCAGCAGGTGGATTCTGAAGATGCTAGTAACTCCACTCTGAATTTGGAATCCTTTGGTAGTAAGGTTCCTGAGAACCATAGCTCTAGACTAGGTGCTAGCAATTTTCCCCCTTTGCTGTCCAAGCAAACTAGCTTTCCAAAGTTGGGGCACATGTTTGTTGATGCTCTTAAGAAGAACAGATCTTGTCAGAGATTTCTCCGAAGCAAGCTGATTGAGCTTGAAGCCAGGCTTGAGGAGAACAAGAAGTTGAAGGAACGTGTTAAAATCCTTAAGGATTTTCAAGTTTCTTGTAGAAGAAGAATGGGACGGGCTTTGTCCCAGAAGAAGGATGCACGTGTCCAATTAATTTCTCTTCCGAAGTTAAAGGCTTCTAAGAACTCCAAGGTCAATGATAAAAAAGTCTCAGCTATTTACTATGGCCCTGCAGAGAATGCACATGTTGCTAACTATAGGATGGCATTAACAGAATTTCCACTCTCATTCACTCGGGCAAAGTGGTCAAAGTTAGAAATGCAAAATCTTGTGAAGGGAATAAAACAGCAGTTTCAAGAAATGCTGCTTCAGAAATCAGTGGATATGTTCAGTGGCTCTGAAAGATCTTTTGAAGATCCAAATGATTTTGATAACATTATGGGATCGATCACTGATCTTGAAATCCCCCCAGAAAACATTCGATTATTTTTGCCTAAAGTGAATTGGGAGCAGTTAGCATCTATGTATGTCGCCGGTCGATCTGCTGCAGAATGTGAAGCAAGGTGGTTGAACTGTGAAGACCCCTTAATCAATCACGATCCATGGAATGTTACAGAGGATAAGAAACTCTTATTTATTTTGCAGCAAAGGGGGCTCAATAGCTGGATTGATATTGCAGTATCACTAAGGACAAACAGGACACCATTTCAGTGCTTGGCACGTTATCAACGGAGTCTTAATGCTTGCATACTGAAAAGGGAATGGACTGTTGATGAGGATGCTCAACTTCGTACTGCTGTAGAAGATTTTGGCGAGGGTAATTGGCAGCTTATAGCTTCTGTTTTGCAAGGACGGACAGGCACCCAATGCTCTAACAGATGGAAAAAGACTCTTCACCCAGCCAGGCATAGGGTGGGAAGATGGACAGCGGATGAAGACAAGCGCTTGAAGGTAGCCGTGATGCTCTTTGGGCCTAAGACATGGACAAAAATAGCTGAATTTGTGCTCGGTCGAACTCAAGTGCAATGTAGAGAAAGATGGGTAAACAGTTTAGATCCTTCCTTGAACTGGGGCCAATGGACTGGAGAGGAGGATGCAAAGTTGAAAGCAGCAATAATGGAACATGGTTATTGTTGGTCTAAGGTTGCTGCATGCATTCCTCCACGTACAGATAGTCAATGCCGGAGGAGATGGAAGGTGCTTTTTCCTCATGAAGTGCCTTTACTTCAAGCAGCCAGAAAGATACAAAAGGTTGCTCTGATATCAAACTTTGTTGATCGGGAGTCAGAACGACCTGCTCTTGGTCCTAAAGACTTTCTTCCAGTGCCAGAAATGGATTCTGTTTCTGAGCCCCAAAAGGATTCACAAAAAAGGAAGAGAAAATCAAAAGTGCAGCCAGAAACTGAGGGGGAAAACAATGCTGCTTCTCGGAATGTTCCAAAAAAGAAAAGATCCCAGAAGCCTCGAAATGGAGCTGAAACCAGTTCCAAGGAAGTCCCAGGAAATAGCAATGCCAATGAAGTTGACAAAGTTGGCGGGGATGATGCGAATTCAAAGAAGAGGAAAAGGGTTAGGAAGCCACAATCGAGGAAGGCTAAATGTTCTGAACCAATACAGGATCGTCCATCATCTGATTTGGATTCAGCAATGTTAGTGATAACTAATGGTGAAGAGGTTGGGGAATTTGCAATGCAAGGTTGTCCATCATCTGATATTGGTTCAGCGATGTTGATGATAACTAATGGTGAAGAGGTTGGGGAATTTGGTGGGCATGATATTACTGACAAGGGAGACTCTCTTGTATCACATTCAAAAAGGGTAAGTACTGTATCCCCTGAAAGTTTGGACCCCCGGATAATTGATGTTGATGGTATTGAGACCATTGGTGCGAATGATACTACCTCACGTAGGAAGAAAAGCACTCCCAAGAGGCATCCTAAAATGAACAAATGTGCTGAACAATCAGGGGAACACCAGGACTCTACCTTGAATGTGAATGGTGCAATGTCAAAAAAGATGAGAAGGGCTCCTAAGCGGCCTCTTAAAAGAAAAATGGGTGCTGATCAATCAGAGGAACACCAGGCATCATCATCTCATGTAGATTCGACATTTGATGGGAATAATGCTACCTCAAATATGAAGAAAAGAACTCCTAAGCTGCATCCCAGAAGGAGAATATATATTGAACAATCAGAAGAACACCAGGCTTCATCCGCTTGTCTGGAATCAATAACCAGTGGTCAAGCAGTTGGTACATCTGGTGGGGGCATTCTTATTGAGGAAAGGGCTCCAAAACCACAAATGCAAATATGTGTGGAAGCAACAGAGAATAGGCCTGATACTTCCTTACATGGAGATTCAAGAGCAACTGTCTGCCAGCAAGATAGGCCCAAAAGGGTTTTTCCTCAATGTCATATAATAGTTAGCCACAGCCACCAAAACCCTAATCGCCACAACCCGTATAAATACCTTCTTTCCTATAGGATTTCACTTCCCAGTAGTCGCCTCTCTCACGAAAACCCTAATCCGAGAGAAAGAGAGAGAGAGAGCTCGAAGATGGCCGAAACCCTAGTTCTCCGCGGTACGATGAGAGCCCACACCGATATGGTGACGGCCATCGCCACCCCAATTGACAACTCCGACATGATCGTCACTTCCTCACGAGACAAGTCCATCATCCTCTGGCACCTCACCAAGGATGACAAGACCTATGGCGTCCCCCGTCGCCGCCTTACCGGCCATTCCCATTTTGTTCAGGACGTTGTCCTCTCCTCCGACGGCCAGTTCGCTCTTTCCGGAAGCTGGGACGGTGAGCTCCGCCTCTGGGATCTCGCTGCCGGCACCTCCGCCCGTCGCTTCGTCGGTCACACCAAGGACGTCCTTTCCGTGGCTTTCTCTGTTGATAACCGCCAGATCGTGTCGGCTTCGCGTGACCGCACCATCAAGCTCTGGAACACTCTTGGTGAGTGCAAGTACACCATCCAGGACGCTGATGCACACTCCGATTGGGTGAGCTGCGTCCGATTCAGCCCTAACAACCTGCAGCCGACGATTGTGTCTGCCTCTTGGGATCGGACAGTGAAAGATGGAGTGATTCTTTTGTACTGGCTTTGCGCTGCTACGGAGCAGAGTATCAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATTTGAAGGTTGATCTCAAGACCGAGGCTGAAAAGAGCGAAGATACCACCACTACTGCCAAGAAGAAGGGAAAGATCATATATTGCACAAGCTTGAGCTGGAGCGCAGATGGAAGCACATTGTTTAGTGGGTACACGGATGGTGTAGTCAGAGTTTGGGGAATTGGCCGTTACTAG 3957 46.47 MASQSGESDDDNDSALDEDLEALRRACILTGSNLNDRATSSGVAATSGAASDADSEGIDDLELVRNIQKRFSIPSEDVPAPLSLKPLSFLPPAVSDEDEDDFEILRAIQKRFSAYHEDTPKSGVDNNLQKKEKVLDSGKQQVDSEDASNSTLNLESFGSKVPENHSSRLGASNFPPLLSKQTSFPKLGHMFVDALKKNRSCQRFLRSKLIELEARLEENKKLKERVKILKDFQVSCRRRMGRALSQKKDARVQLISLPKLKASKNSKVNDKKVSAIYYGPAENAHVANYRMALTEFPLSFTRAKWSKLEMQNLVKGIKQQFQEMLLQKSVDMFSGSERSFEDPNDFDNIMGSITDLEIPPENIRLFLPKVNWEQLASMYVAGRSAAECEARWLNCEDPLINHDPWNVTEDKKLLFILQQRGLNSWIDIAVSLRTNRTPFQCLARYQRSLNACILKREWTVDEDAQLRTAVEDFGEGNWQLIASVLQGRTGTQCSNRWKKTLHPARHRVGRWTADEDKRLKVAVMLFGPKTWTKIAEFVLGRTQVQCRERWVNSLDPSLNWGQWTGEEDAKLKAAIMEHGYCWSKVAACIPPRTDSQCRRRWKVLFPHEVPLLQAARKIQKVALISNFVDRESERPALGPKDFLPVPEMDSVSEPQKDSQKRKRKSKVQPETEGENNAASRNVPKKKRSQKPRNGAETSSKEVPGNSNANEVDKVGGDDANSKKRKRVRKPQSRKAKCSEPIQDRPSSDLDSAMLVITNGEEVGEFAMQGCPSSDIGSAMLMITNGEEVGEFGGHDITDKGDSLVSHSKRVSTVSPESLDPRIIDVDGIETIGANDTTSRRKKSTPKRHPKMNKCAEQSGEHQDSTLNVNGAMSKKMRRAPKRPLKRKMGADQSEEHQASSSHVDSTFDGNNATSNMKKRTPKLHPRRRIYIEQSEEHQASSACLESITSGQAVGTSGGGILIEERAPKPQMQICVEATENRPDTSLHGDSRATVCQQDRPKRVFPQCHIIVSHSHQNPNRHNPYKYLLSYRISLPSSRLSHENPNPRERERESSKMAETLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWHLTKDDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIQDADAHSDWVSCVRFSPNNLQPTIVSASWDRTVKDGVILLYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEDTTTTAKKKGKIIYCTSLSWSADGSTLFSGYTDGVVRVWGIGRY* 1319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2514164 2540954 + Vvi17g236 Vvi17g236 778933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g236 1318 MobiDBLite consensus disorder prediction 834 925 - -
Vvi17g236 1318 SMART WD40_4 1107 1146 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1279 1314 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1059 1099 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1149 1188 IPR001680 GO:0005515
Vvi17g236 1318 SMART WD40_4 1190 1252 IPR001680 GO:0005515
Vvi17g236 1318 MobiDBLite consensus disorder prediction 653 670 - -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1114 1155 IPR001680 GO:0005515
Vvi17g236 1318 SUPERFAMILY Homeodomain-like 378 450 IPR009057 -
Vvi17g236 1318 Gene3D - 454 503 - -
Vvi17g236 1318 Gene3D - 562 608 - -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 397 449 IPR001005 -
Vvi17g236 1318 SMART sant 454 503 IPR001005 -
Vvi17g236 1318 SMART sant 301 398 IPR001005 -
Vvi17g236 1318 SMART sant 401 451 IPR001005 -
Vvi17g236 1318 SMART sant 559 607 IPR001005 -
Vvi17g236 1318 SMART sant 507 556 IPR001005 -
Vvi17g236 1318 Gene3D - 400 449 - -
Vvi17g236 1318 Coils Coil 205 229 - -
Vvi17g236 1318 CDD SANT 563 605 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1114 1147 - -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1156 1188 IPR001680 GO:0005515
Vvi17g236 1318 SUPERFAMILY Homeodomain-like 505 601 IPR009057 -
Vvi17g236 1318 Pfam Myb-like DNA-binding domain 561 604 IPR001005 -
Vvi17g236 1318 Pfam Myb-like DNA-binding domain 509 552 IPR001005 -
Vvi17g236 1318 Pfam Myb-like DNA-binding domain 455 500 IPR001005 -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 141 174 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 34 48 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 894 918 - -
Vvi17g236 1318 Gene3D - 509 559 - -
Vvi17g236 1318 ProSitePatterns Trp-Asp (WD) repeats signature. 1133 1147 IPR019775 -
Vvi17g236 1318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 453 505 IPR017930 -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 503 554 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 555 605 IPR001005 -
Vvi17g236 1318 SUPERFAMILY Homeodomain-like 434 504 IPR009057 -
Vvi17g236 1318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 509 550 IPR017930 -
Vvi17g236 1318 ProSiteProfiles Myb-like domain profile. 455 501 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1066 1108 IPR001680 GO:0005515
Vvi17g236 1318 MobiDBLite consensus disorder prediction 34 57 - -
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1194 1231 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1154 1188 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1064 1098 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1110 1146 IPR001680 GO:0005515
Vvi17g236 1318 Pfam WD domain, G-beta repeat 1290 1313 IPR001680 GO:0005515
Vvi17g236 1318 CDD SANT 510 554 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1290 1318 IPR001680 GO:0005515
Vvi17g236 1318 SUPERFAMILY WD40 repeat-like 1059 1314 IPR036322 GO:0005515
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1066 1100 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 134 174 - -
Vvi17g236 1318 Gene3D - 1059 1231 IPR015943 GO:0005515
Vvi17g236 1318 Gene3D - 1233 1318 IPR015943 GO:0005515
Vvi17g236 1318 PRINTS G protein beta WD-40 repeat signature 1133 1147 IPR020472 -
Vvi17g236 1318 PRINTS G protein beta WD-40 repeat signature 1175 1189 IPR020472 -
Vvi17g236 1318 PRINTS G protein beta WD-40 repeat signature 1301 1315 IPR020472 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1282 1318 - -
Vvi17g236 1318 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 7 975 - -
Vvi17g236 1318 MobiDBLite consensus disorder prediction 634 751 - -
Vvi17g236 1318 CDD SANT 457 501 IPR001005 -
Vvi17g236 1318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 555 609 IPR017930 -
Vvi17g236 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1156 1188 - -
Vvi17g236 1318 CDD WD40 1062 1313 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14183 PF00249 Myb_DNA-binding 5.80E-12 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g236 K09422 - vvi:100268025 1944.09