Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g242 ATGATGGAAAATTGGGGAGATCGGCTCAGATTTACACAGTCATCCCTTTGGGCAAGAGAGTCACTTCTGGCTTTACAAAGATTAGTTCTTGGTGCAAGCGGTCTTGGTGTTCAAGTTGGTGATTGTTGGCTTCAATATGCAAAGCTCTGCCGTTCAGCTGGTTATTATGAGACAGCTAACCAAGCAATTCTGGAAGCTCAGGCTTCAGGTCCACCTAAAGCTCACATGGAGAAAGCTTCGCTGGGTTTTTCTGCCACCATAAAGAATTTGATTCAATTAACAAGTATAAAAGATCAAGGTTGCTCATACTGGTTCTACCAAAGGTACCGCTGGTGTCTTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTTCTGAAACGAAGAACAGACGGTATGATGCAAAGACATTTGCTTCCATGTTACGGGCAATGATGGAGAAATTTGAAAGGGATATCAGGGATACAACGAACCTTTTTTATGATAACCATTTTATAATAGCTTCTTCATTGAACAGTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACAAATTGGTCGGCTGGAAGTAGGCAGCGAGATTGTGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAGGAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTTGTTTGCACAGACAGTGCGGTTTATGCAGAAGGACCAACTAGGCCTACTGGAGGAGCAGCTGCTATTGCTATGCTAGAAGGGCCTGATGCTCCTATTGCATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCGCATTTTCCTCTCTTCTAA 969 42.11 MMENWGDRLRFTQSSLWARESLLALQRLVLGASGLGVQVGDCWLQYAKLCRSAGYYETANQAILEAQASGPPKAHMEKASLGFSATIKNLIQLTSIKDQGCSYWFYQRYRWCLLKLPDTFSQLVSETKNRRYDAKTFASMLRAMMEKFERDIRDTTNLFYDNHFIIASSLNSLTVVTSLLEKYGIDPKQIGRLEVGSEIVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPTRPTGGAAAIAMLEGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPHFPLF* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2565690 2576275 - Vvi17g242 Vvi17g242 778939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g242 322 CDD init_cond_enzymes 172 310 - -
Vvi17g242 322 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 220 235 IPR000590 GO:0004421|GO:0008299
Vvi17g242 322 Gene3D - 129 320 IPR016039 GO:0016746
Vvi17g242 322 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 172 289 IPR013528 -
Vvi17g242 322 SUPERFAMILY Thiolase-like 137 285 IPR016039 GO:0016746
Vvi17g242 322 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 172 317 - -
Vvi17g242 322 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 290 317 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vvi17g242 322 Pfam FAT domain 1 129 IPR003151 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g242 K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] - vvi:104882418 305.834
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3