Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g243 ATGCTTCTCAATCTAAAGCAGTTGAGGGATGTTTTCAACAGTATGGTACTGCATGGAACTATTATGCAGATACTAGACCTGTTCATTAGCACAGGGAAACCCCATAATTTGGTGGACTACTTGATGCCAGATGACACCAAATCCTACAAACCGGCATCACCCTCCAATGGTGACAGCTCAACTCCTGCAGATGTCACCAAATTTGACCAACTTATGGTGGAGACACGTGCTGTGTTATCAAGTGCTGAATTCATAAATGTTATCGACGTATCACTGAGAACGGTGGTGGATGCAGTGGTGGAGGACATGATGGGGGTTCAGCTGGGAGGAGGCAGTCCATCATCAGGGATGGTGCTGGCCAAACTTCTGCCACGAGTTGCCCAGATGGGTCCTTTGCTGTTGGAAGAACCCTCCAAAAACAGGTTCATCCAAATTATCCAAAAGGCACCAGAAGTTGAATTCTTTTTCACACTTCTGTATGCAAACATGCCGACCTTATGA 501 46.11 MLLNLKQLRDVFNSMVLHGTIMQILDLFISTGKPHNLVDYLMPDDTKSYKPASPSNGDSSTPADVTKFDQLMVETRAVLSSAEFINVIDVSLRTVVDAVVEDMMGVQLGGGSPSSGMVLAKLLPRVAQMGPLLLEEPSKNRFIQIIQKAPEVEFFFTLLYANMPTL* 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2576749 2586959 + Vvi17g243 Vvi17g243 778940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g243 166 PANTHER PEROXISOMAL BIOGENESIS FACTOR 3 3 164 IPR006966 GO:0005779|GO:0007031
Vvi17g243 166 PANTHER PEROXISOME BIOGENESIS PROTEIN 3-2-LIKE 3 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g243 K13336 PEX3; peroxin-3 - vvi:104882355 316.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g243 Blo04g00841 . . . . Bpe13g00369 . . . . . Cma11g00301 . Car11g00275 . . . . . . . . . . Cla06g01434 Cam06g1589 Cec06g1649 Cco06g1641 Clacu06g1550 Cmu06g1505 Cre06g2314 . . . . . . . . . . . . . Bpe15g00521 . . . Cmo10g00342 Cmo11g00304 . . . . . . . . . . . . . . . . . . . . Lsi06g01301 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004939 2 1 2 2 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 2 41