Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g244 ATGGCTGAATCGTTTGCTTTTGCCATAGCTGAGAGTGTTTTGGGGAAGTTGGGCTCTACCCTCATCCAAGAAGTTGGCCTTGCTTGGGGTGTTAAAACCGAGCTGGGAGAGCTCAAGGATACTTTATCCACCATCCACGCCCTGCTCTTGGACGCTGAGGAGAAGCAAGCAACCAATCTTCAGATTAGCGATTGGCTTGGAAAGCTCAAACTCGTCCTTTATGATGCAGAGGATGTGCTCGATGAATTTGACTATGAAGCTTTGCGGCAGCAGGTGGTGGCCAGCGGATCAAGCATTAGGTCAAAGTCTAAATTTAATCTCTCCGAGGGAATTGCAAACACCCGTGTAGTGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATGTCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAAGCAATCCAGTGATACAGAGAATATTTCTGTTATTCCCATAGTTGGGATTGGGGGGCTAGGCAAGACATCTCTGGTTAAACTTGTGTATAACGATGAGAGGGTAGTGGGCCATTTCTCAATTAAAATGTGGGTTTGCGTGTCAGATGAGTTTGATGTTAAAAAGCTGGTAAAGGAAATCCTTAAGGAGATCAAAGGTGATGAAAATTACAGTGACTTCTCCTTGCAGCAGCTGCAGAGTCCTCTTAGAAATGCATTAGATGGTGAAAAGTTCTTGCTGGTTTTGGATGACGTGTGGAATACAGATCGTGAGAAGTGGCTTGAGCTGAAAGACTTGCTCATGGACGGTGCCAAAGGAAGCAAAATTCTTGTAACTACACGCAAGAAGTCAATTGCTTCAATCATGGGCACTTTTCCCATGCAAGAAATAAAGGGTCTTTCTCATGAGGATTGTTTGTCTTTATTTGTGAAATGCGCATTCATGGATGGAGAAGAAAAACGATATCCAACCCTTTTAAAAATCGGGGACCAGATTGTTGAGAAATGTGCAGGGGTTCCTCTGGCTGTGAGAAGTTTAGGGAGTTTACTGTATTCGAAAAGGGATGAATGGGATTGGGTATCCATTAGAGATAGCGAAATATGGGAATTAGAACAAAATGAAGATGGTATTATGGCTGCGTTAAGACTGAGCTATTATGATTTGCCTTATCACTTGAAACAATGCTTTGCTCTTTGTTCCCTATTTCCCAAAGATTATGAATTTAGTAATGTTGTTTTGATCTCAACTTGGATGGCAGAAGGCCTCATTCATTCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAGATATATTAATGAGCTATTATCGAGATCTTTCTTTCAAGATGTTGAGCAGCTGATACTAGGAGTACTATATACATTCAAAATGCACGATCTTGTACATGATCTTGCGATGTTTTTTGCACAACCTGAGTGTTTAATACTAAATTTTCATAGTAAAGATATTCCTAAAAGGGTTCAACACGCCGCATTTTCTGATACCGAGTGGCCCAAAGAAGAGTGTAAAGCTTTAAAATTCTTGGAGAAGTTGAATAATGTTCATACCATTTATTTTCAAATGAAAAATGTGGCCCCTAGAAGCGAATCATTTGTTAAGGCATGCATCTTGAGATTCAAATGTATACGGATATTGGATTTACAAGACTCTAACTTTGAAGCATTGCCTAAATCTATTGGTAGTCTGAAGCATCTAAGATTTTTGGACTTAAGTGGAAATAAGAGAATCAAGAAACTCCCTAATTCCATTTGTAAGTTATACCATTTGCAAGCTTTGTCACTCTCACGATGTTCAGAACTTGAAGAATTACCAAGAGGCATAGGGAGTATGATCAGTTTGAGGATGGTATCTATAACAATGAAACAAAGGGATTTATTTGGAAAGGAAAAAGGGTTGAGAAGCTTGAATTCTCTTCAACGATTAGAGATTGTTGATTGTCTCAATTTGGAATTTTTGTCTAAAGGAATGGAAAGCCTTATTGAACTTCGAATGTTAGTCATTACCGATTGTCCAAGTTTGACATTCAAAGCTTTGGGAGCCTACAAATTTTGTTCTTTGACAATTTACCACAATTGGAGGCTTTACCGAGGTGGCTTCTTCATGAGCCAACTTCTAACACTCTACACCATTTAA 2127 40.01 MAESFAFAIAESVLGKLGSTLIQEVGLAWGVKTELGELKDTLSTIHALLLDAEEKQATNLQISDWLGKLKLVLYDAEDVLDEFDYEALRQQVVASGSSIRSKSKFNLSEGIANTRVVQRETHSFVRASDVIGRDDDKENIVGLLKQSSDTENISVIPIVGIGGLGKTSLVKLVYNDERVVGHFSIKMWVCVSDEFDVKKLVKEILKEIKGDENYSDFSLQQLQSPLRNALDGEKFLLVLDDVWNTDREKWLELKDLLMDGAKGSKILVTTRKKSIASIMGTFPMQEIKGLSHEDCLSLFVKCAFMDGEEKRYPTLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWELEQNEDGIMAALRLSYYDLPYHLKQCFALCSLFPKDYEFSNVVLISTWMAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQLILGVLYTFKMHDLVHDLAMFFAQPECLILNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKLNNVHTIYFQMKNVAPRSESFVKACILRFKCIRILDLQDSNFEALPKSIGSLKHLRFLDLSGNKRIKKLPNSICKLYHLQALSLSRCSELEELPRGIGSMISLRMVSITMKQRDLFGKEKGLRSLNSLQRLEIVDCLNLEFLSKGMESLIELRMLVITDCPSLTFKALGAYKFCSLTIYHNWRLYRGGFFMSQLLTLYTI* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2589882 2593611 - Vvi17g244 Vvi17g244 778941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g244 708 CDD RX-CC_like 6 91 IPR038005 -
Vvi17g244 708 Gene3D - 114 282 IPR027417 -
Vvi17g244 708 SUPERFAMILY L domain-like 454 684 - -
Vvi17g244 708 ProSiteProfiles Leucine-rich repeat profile. 562 584 IPR001611 GO:0005515
Vvi17g244 708 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 672 - -
Vvi17g244 708 Pfam Rx N-terminal domain 11 99 IPR041118 -
Vvi17g244 708 Gene3D - 374 464 IPR036388 -
Vvi17g244 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 389 IPR027417 -
Vvi17g244 708 Gene3D Ribonuclease Inhibitor 478 689 IPR032675 -
Vvi17g244 708 PANTHER DISEASE RESISTANCE PROTEIN RP 6 672 IPR044974 GO:0006952
Vvi17g244 708 Gene3D - 289 373 IPR042197 -
Vvi17g244 708 PRINTS Disease resistance protein signature 155 170 - -
Vvi17g244 708 PRINTS Disease resistance protein signature 229 243 - -
Vvi17g244 708 PRINTS Disease resistance protein signature 326 340 - -
Vvi17g244 708 PRINTS Disease resistance protein signature 558 574 - -
Vvi17g244 708 Gene3D - 10 113 - -
Vvi17g244 708 Pfam NB-ARC domain 134 375 IPR002182 GO:0043531
Vvi17g244 708 Pfam Leucine rich repeat 541 595 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g244 - - - vvi:100245709 1097.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313