Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g248 ATGGCATCGGAGAAGGAGATGAGAAACATAGGTGAAGCACACCCAATGAAGAGTGGAGATGGTCTTTATAGCTACTCCAACAACTCTTACTTACAGAGAGGAGTTATGAACGCTGCCAAGCAAATTGTGAGTGAGGCAATTGTGGAAAACCTTGACATCCTCAAATTTTCTCCTTCAACCACCGTAAGGGTGGCTGACCTGGGTTGTTCAGTTGGGCCTAACACCTTCTTTGCAGTGCAAAACATACTGGAAGCTATTGAGCTCGAGTGCCAAAACCAAGGGCTCGATTCCCAAATCCCTGAATTCCAAGTCTTCTTTAATGATCACACCTCCAACGACTTCAACTCTCTATTCTCATCCCTCCCTCCCAATAGGCGATATCACGCTGCTGGGGTTCCGGGTTCTTTCTACTCTCGCCTGTTTCCCAATCGCTCTCTTCATATTGTTCATTCATCCTGCGCCATTCAGTGGCTTTCAAGAGTGCCAAAGAAGGTGGTGGACAGAAGTTCTCAAGCCTGGAACAAAGGAAGGATCTATTACCCAAGTGCTGCGGATGAAGTTGTTGAGGCCTATTCAGCTCAGTGTGCAGAGGACATGGCACGGTTTTTGCAGGCGAGGGCACAAGAGATTGCAGATGGAGGGTTGATGATCCTAATCTTTGCAGCCCGCCCTGATGAAATTCCTCATTCTCAACTCGTTGCCAATATAATGCACGACATGTTGGGATGTTGCCTCATGGACATGGCCAAAAAGGGAATAGTAAGCGAAGAGAAAGTGGATATGTTCAACTTGCCAGTGTATCACATGTCTGATCAAGAGCTGGAAGCGGCTGTAGAGAGAAATGGATGTTTCAGCATTGAGAGAATGGAGAGCCTACCTCCCATCTCAAGTACTTTACAGTCACTTGTAAGCACTCGTCATAAAGCCCAAGCAATCTCATTCCACGTAAGAGCTGCCATGGAGGACCTCATCAAGGCACATTTTGGAGAAGAGATCCTGGATCAACTCTTTGACTCGTATTCTAAAAAACTTGAACAAGAGTATTCCCTGATTGAGTCAGCTGGGACATCAGCACTGAACTTGTGTGCTGTGCTCAAACGCAAACTATGA 1110 46.49 MASEKEMRNIGEAHPMKSGDGLYSYSNNSYLQRGVMNAAKQIVSEAIVENLDILKFSPSTTVRVADLGCSVGPNTFFAVQNILEAIELECQNQGLDSQIPEFQVFFNDHTSNDFNSLFSSLPPNRRYHAAGVPGSFYSRLFPNRSLHIVHSSCAIQWLSRVPKKVVDRSSQAWNKGRIYYPSAADEVVEAYSAQCAEDMARFLQARAQEIADGGLMILIFAARPDEIPHSQLVANIMHDMLGCCLMDMAKKGIVSEEKVDMFNLPVYHMSDQELEAAVERNGCFSIERMESLPPISSTLQSLVSTRHKAQAISFHVRAAMEDLIKAHFGEEILDQLFDSYSKKLEQEYSLIESAGTSALNLCAVLKRKL* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2681863 2684238 + Vvi17g248 Vvi17g248 778945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g248 369 Pfam SAM dependent carboxyl methyltransferase 58 367 IPR005299 GO:0008168
Vvi17g248 369 Gene3D Vaccinia Virus protein VP39 28 295 IPR029063 -
Vvi17g248 369 Gene3D - 16 349 IPR042086 -
Vvi17g248 369 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 12 354 IPR005299 GO:0008168
Vvi17g248 369 PANTHER F9L1.6 12 354 - -
Vvi17g248 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 12 368 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g248 - - - vvi:100264510 733.406
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g824 Vvi17g248 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002487 1 2 0 2 1 2 1 2 2 2 2 2 1 2 2 1 2 0 1 2 2 1 2 2 2 2 2 2 3 11 59