Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g25 ATGGGGAAAGAAAACCAAGTGTCTGATATGCAAATCGACGATCAAAAATCGAATTCCGATCATGCCAACCCCAAATTCTCAATCAATGTGCTGCAGCTCTTGAAGTCTGCGCAAATGCAGCATGGATTACGACATGGTGATTACACGCGCTACCGGAGGTATTGCACTGCTCGATTGAGGCGGTTGTACAAGTCTCTGAAATTTACTCATGGTCGTGGTAAATACACCCGAAGATCCATTACCGAATCTACTGTGACAGAAGTGAGGTTTCTGCATCTCATTCTATATACAGCAGAAAGAGCTTGGAGCCATGCCATGGAGAAAAGACAGCTTCCAGATGGTCCAAATGCACGTCAACGGATCTACCTGATTGGTAGGCTGAGGAAGGCAGTAAAATGGGCTACTCTATTTTCACAATTGTGTGCAATTAAGGGAGATTCCAAAACATCTTTAGAAGCTGAGGCCTATGCCTCCTATATGAAAGGGACTTTGTTGTTTGAACAAGACCAGAATTGGGATATGGCACTAAAACTTTTTAAGAGTTCCAGAGCTGTCTATGAGGAACTTGGGAAATACGGAGACCTGGAGAATCAAGTTTTGTGCCGTGAACGTGTTGAGGAGCTAGAACCAAGTATTCGATATTGCCTCCATAAAATAGGTGCATCAAATTCACTAACTCCTGAACTCCTACACATGGAAGGGCCTGCACTGGATCTTTTCAGAGCTAAATTGGAGGCTGTTATGGCAGAGGCAAGGTCTCAACAGGCTGCATCTATGACAGAGTTTCATTGGCTTGGTCACAGATTTCCAATTTCTAATGCGAAAACTCGGGTTTCCATTTTGAAAGCTCAAGATTTGGAGAAAGATCTTCATGGTCCAGCAGCAGACTCACTTCCAGCAGAGAAAAAACTTGGCATTTTTGACAAAATTTTTACTGCATATCATGAGGCCAGGAGTTCCATCCGCAATGACTTGGTCACTGCAGGCAGTGCTGGAAACATGAAAGATGACTTAAATGGCCTTGATAAGGCTGTTAGTGCTGTCTTAGGCGAAAGAACCATTGAACGGAACCAGTTGTTGATTCGCATTGCTAAAAGTAAACTCACTAAGCAAGAAAAAAATGAGAAAGCGACAAAGCCTGAAGAGCTTGTTCGGTTGTATGATCTTTTATTACAGAATGTTGCTGATCTCTCTGATTTAGTTAGTTCTGGAAGAGACAGAAAACCAGAAGAAGTGTCATTTACTGAGGAGTGTGCTCTTAAAAGTTTAGCTTTCCGAGCAGAAAGGTGCTTTTACTTGGCAAAGTCATACAGTTTGGCTGGAAAGAGGACAGAAGCATATGCATTATATAGCCATGCCCGCTCTCTTGCAGATGATGCCCTGCAAAAACTTCAAGCTTCAAGTAACAATGATCAGACTCTGATCAAGGGGTTGAAGATGTTATATAATGACTGTAGATCAAACAGTTGTATAGAGCATGCCACGGTGATTATGGAGGAGGAGAAGGCTCCAGAGAATCTCTCACAGAAAATTTCTAATATATCATTGGCTGGAGCTCACAAAAAGGTGGAGACGTCTCTGATGGAGAAACTGGATGTCTACGAGTCTCTGGTGGGTGCATCAAACGTGAAAAGTGTTCCTCGCATTGAAGCCTTCCCACCAGCCTTCCAAACGATCCCTCGCAACCCCATTGTTTTGGACATTGCCTACAATTTTGTTGATTTCCCATCCCTAGAAAACAGGATGAAGAAAGACAAGAAGGGCTTCATTAGTCGGCTTTGGCGATGA 1788 43.18 MGKENQVSDMQIDDQKSNSDHANPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRRSITESTVTEVRFLHLILYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSQLCAIKGDSKTSLEAEAYASYMKGTLLFEQDQNWDMALKLFKSSRAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGASNSLTPELLHMEGPALDLFRAKLEAVMAEARSQQAASMTEFHWLGHRFPISNAKTRVSILKAQDLEKDLHGPAADSLPAEKKLGIFDKIFTAYHEARSSIRNDLVTAGSAGNMKDDLNGLDKAVSAVLGERTIERNQLLIRIAKSKLTKQEKNEKATKPEELVRLYDLLLQNVADLSDLVSSGRDRKPEEVSFTEECALKSLAFRAERCFYLAKSYSLAGKRTEAYALYSHARSLADDALQKLQASSNNDQTLIKGLKMLYNDCRSNSCIEHATVIMEEEKAPENLSQKISNISLAGAHKKVETSLMEKLDVYESLVGASNVKSVPRIEAFPPAFQTIPRNPIVLDIAYNFVDFPSLENRMKKDKKGFISRLWR* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 191902 199918 + Vvi17g25 Vvi17g25 778722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g25 595 PIRSF SRP68 26 589 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi17g25 595 CDD SRP68-RBD 29 217 IPR034652 GO:0003723
Vvi17g25 595 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g25 595 Pfam RNA-binding signal recognition particle 68 43 573 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi17g25 595 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 14 594 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi17g25 595 Gene3D - 25 221 IPR038253 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g25 K03107 SRP68; signal recognition particle subunit SRP68 - vvi:100262919 1160.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g25 . . Bda06g00707 . . . . Bma12g01097 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0261 Cone19ag0246 . . . . . Blo15g00188 . . Bpe07g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005497 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 1 40