Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g250 ATGGACGGTACGGAAGGGCTTGTCAGAGGACAGAGAGTCCTCAACACTGGTTCTCCTATCACTGTTCCTGTGGGTAGGGCAACCCTTGGACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAAGCAGAGTGAAAGCAAGTGTGCACTTGTGTACGGTCAAATGAATGAGCCTCCTGGTGCTCGTGCTCGTGTTGGGCTTACTGGTCTTACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTCCTCTTTATTGATAACATTTTCCGCTTTACCCAAGCAAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTATCAGCCTACCTTGGCTACAGATCTTGGAGGTCTTCAGGAGCGTATTACCACAACCAAGAAAGGTTCCATCACATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCTCGCATGCTCTCCCCCCATATTTTAGGAGAAGAGCATTATAACACTGCTCGTGGCGTTCAGAAGGTTCTCCAGAACTATAAGAATCTTCAAGATATTATTGCCATTTTGGGAATGGATGAGCTTAGTGAAGATGACAAGTTGACTGTTGCTCGTGCTCGTAAAATTCAAAGGTTCTTGAGCCAGCCTTTCCATGTTGCTGAAGTGTTCACGGGAGCCCCTGGAAAATACGTAGAACTAAAAGAGAGCATTACCAGTTTCCAAGGTGTCTTGGATGGAAAATACGATGATCTTTCTGAGCAATCTTTCTACATGGTTGGTGGAATTGAAGAAGTTATTGCCAAGGCCGAGAAAATTGCCAAGGAGTCAGCTGCTTAA 1260 45.4 MDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGDIKTDHFLPIHREAPSFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAA* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2692100 2698566 - Vvi17g250 Vvi17g250 778947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g250 419 Gene3D - 20 297 IPR027417 -
Vvi17g250 419 CDD F1-ATPase_beta 19 300 - -
Vvi17g250 419 PIRSF ATPase_subunit_beta 1 419 - -
Vvi17g250 419 CDD ATP-synt_F1_beta_C 302 409 - -
Vvi17g250 419 TIGRFAM atpD: ATP synthase F1, beta subunit 1 413 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vvi17g250 419 PANTHER ATP SYNTHASE 1 418 - -
Vvi17g250 419 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 298 414 - -
Vvi17g250 419 SMART AAA_5 86 358 IPR003593 -
Vvi17g250 419 Gene3D - 298 418 IPR024034 -
Vvi17g250 419 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 74 295 IPR000194 GO:0005524
Vvi17g250 419 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 1 418 - -
Vvi17g250 419 Hamap ATP synthase subunit beta [atpB]. 2 413 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vvi17g250 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 301 IPR027417 -
Vvi17g250 419 ProSitePatterns ATP synthase alpha and beta subunits signature. 286 295 IPR020003 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g250 K02133 ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2] - vvi:100259544 789.645
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g390 Vvi17g250 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000576 6 4 5 5 3 4 4 3 3 2 3 2 4 3 3 7 4 5 2 4 2 0 2 2 3 3 3 6 3 2 102