Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g253 ATGCTTCTCCAGTCTAACCCTGTTCACAAGAAGGTCCCGGTGCTTGTGCAAGATGGTAGACCAATTGCCGAGTCCCTTGTCATCCTTGAGTACATAGATGAGGCATGGAAAGGCTACCCTCTATTGCCCGAGGATCCTTCTGAAAGAGCCAAAACCCGATTCTGGGCAAGATTCACTGATGAGAAGTGTGTGCTCGGTGCCTGGGCTGCTTGCTGTGCCAAAGGACATGAACGAGAGAAAGCTATAGAGTCTGCACAAGAATCGCTGAGTTTTCTAGAAAAGCAGATTGAAGGGAAGAAATTTTTTGGGGGAGAGACGATGGGCTTGCTGGATCTGGTGGTGGGTTCACTGCCTAACTGGATCGAATTCTTGGAAGAACATGGAGGCATGAAGCTGCTGGATGAAGAGAAGTTTCCATCCCTTTATGAATGGGCTCAGAAATTTATCAACATTCCAATCATCAATTTTATCATGCAATTTCAAGTAAATTTCATTTTATCACCATCATTTCTTATCATCTCGTTCAAGCCTTAA 534 44.76 MLLQSNPVHKKVPVLVQDGRPIAESLVILEYIDEAWKGYPLLPEDPSERAKTRFWARFTDEKCVLGAWAACCAKGHEREKAIESAQESLSFLEKQIEGKKFFGGETMGLLDLVVGSLPNWIEFLEEHGGMKLLDEEKFPSLYEWAQKFINIPIINFIMQFQVNFILSPSFLIISFKP* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2707208 2720616 - Vvi17g253 Vvi17g253 778950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g253 177 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 45 169 IPR010987 -
Vvi17g253 177 Gene3D Glutaredoxin 1 41 - -
Vvi17g253 177 SFLD Main (cytGST) 1 158 - -
Vvi17g253 177 SUPERFAMILY GST C-terminal domain-like 34 158 IPR036282 -
Vvi17g253 177 SUPERFAMILY Thioredoxin-like 2 42 IPR036249 -
Vvi17g253 177 CDD GST_C_Tau 46 146 IPR045074 GO:0004364|GO:0006749
Vvi17g253 177 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 169 IPR045073 -
Vvi17g253 177 Gene3D - 42 165 - -
Vvi17g253 177 SFLD Main.3: Omega- and Tau-like 1 158 IPR045073 -
Vvi17g253 177 Pfam Glutathione S-transferase, N-terminal domain 2 34 IPR004045 -
Vvi17g253 177 Pfam Glutathione S-transferase, C-terminal domain 77 152 IPR004046 -
Vvi17g253 177 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 40 IPR004045 -
Vvi17g253 177 PANTHER GLUTATHIONE S-TRANSFERASE U7-LIKE 1 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g253 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100267881 320.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g253 . . . . . . . . . . . . . . . . Cpe04g01384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01703
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25