Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g254 ATGTCGGAGGTCCCAAATGTTTTCAGTAAGAAAGTAGCCGATCGCTACCTTAAGCGCGAAGTTCTCGGGGAAGGTACCTATGGAGTCGTTTCCAAAGCCATTGATACAAAGACTGGACAGATAGTTGCAATTAAGAAAATTAGGCTGGGGAAGCACAAAGAAGGCGTGAACTTTACTGCTCTTCGGGAAATTAAACTGCTGAAAGAACTGAAGGATCCCCATATAATTGAGTTAATTGATGCATTTCCTCACAAGGGGAACTTGCATCTTGTGTTTGAATTTATGGAGACTGACCTTGAAGCAGTTATTCGTGATAGGAATATAGTCCTTTCACTTGCTGACATAAAGTCATTCCTGCAGATGACATTAAAAGGACTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCGAATAACTTGTTGATAGGAGATAAGGGACAGCTTAAACTTGCAGATTTTGGATTAGCACGTATCTTTGGGAGCCCTGACCGCAAGTTTACTCATCAGGTATTTGCTCGATGGTATAGAGCACCTGAGCTGTTGTTTGGCTCCAAGCAATATGGTCCTGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTCCTCCGCCGACCTTTTCTACAGGGTTCTAGTGACATTGATCAATTAGGAAAGATATTTGCGGCTTTTGGAACACCAAAGCCTGCTCAGTGGCCTGATATGGTATACCTTCCCGATTATGTTGAATACCAATTTGTTCCTGCACCCCCTTTGCGTTCATTGTTTCCAATGGCCAGCGATGATGCTTTAGATCTGCTATCAAAGATGTTCACATACGATCCAAAAACTAGAATTTCGGTGCAGCAGGCATTAGAGCACAGGTACTTCACATCTGGACCTCTGCCTACAGAACCAGCTAAGCTCCCAAGACCTCACCCTAAGAGAGAATCTCTCAATACTAGGGTTTCAGATTTTAATCAGCAGGAGGGTCCTACTGTGTTATCTCCCCCAAGGAAGTCTAGGAGAGTGATGCCACAACGTGATGGATTTGAAGAAAATGCTCACCAAGTTGAGAAGAGTGATGAACATGTAAACGATATCAGACAGGCAACTGGTGAGAGAATGAGCTGGAATGAACATGCACCGATGTCAATAGATTTTTCTGTTTTCGGATCAAGACCCCCACCTAGGCCTACTATTAACAGTGCTGATAAATCACGCCTAAAAAGGAAATTAGATCTTGAATTCCAACAACCTGATCAGGACTGA 1269 43.26 MSEVPNVFSKKVADRYLKREVLGEGTYGVVSKAIDTKTGQIVAIKKIRLGKHKEGVNFTALREIKLLKELKDPHIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSLADIKSFLQMTLKGLAFCHKKWVLHRDMKPNNLLIGDKGQLKLADFGLARIFGSPDRKFTHQVFARWYRAPELLFGSKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKPAQWPDMVYLPDYVEYQFVPAPPLRSLFPMASDDALDLLSKMFTYDPKTRISVQQALEHRYFTSGPLPTEPAKLPRPHPKRESLNTRVSDFNQQEGPTVLSPPRKSRRVMPQRDGFEENAHQVEKSDEHVNDIRQATGERMSWNEHAPMSIDFSVFGSRPPPRPTINSADKSRLKRKLDLEFQQPDQD* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2724697 2742734 + Vvi17g254 Vvi17g254 778951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g254 422 PANTHER CYCLIN-DEPENDENT KINASE D-2 11 361 - -
Vvi17g254 422 SMART serkin_6 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g254 422 SUPERFAMILY Protein kinase-like (PK-like) 11 302 IPR011009 -
Vvi17g254 422 MobiDBLite consensus disorder prediction 320 334 - -
Vvi17g254 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vvi17g254 422 Gene3D Transferase(Phosphotransferase) domain 1 97 312 - -
Vvi17g254 422 PANTHER CELL DIVISION PROTEIN KINASE 11 361 - -
Vvi17g254 422 MobiDBLite consensus disorder prediction 386 422 - -
Vvi17g254 422 Pfam Protein kinase domain 18 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g254 422 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524
Vvi17g254 422 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Vvi17g254 422 MobiDBLite consensus disorder prediction 298 343 - -
Vvi17g254 422 CDD STKc_CDK7 15 309 IPR037770 GO:0005675|GO:0008353|GO:0070985
Vvi17g254 422 MobiDBLite consensus disorder prediction 403 422 - -
Vvi17g254 422 ProSiteProfiles Protein kinase domain profile. 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g835 Vvi17g254 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76310 PF00069 Pkinase 2.30E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g254 K02202 - vvi:100247566 858.211