Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g256 ATGGATTCAGAAGAAGAAATACTGAGTCCATGTGTTTCGGATTCTGATGTTGATGATAAGGATTTGTGGAGGGTAGAGATTGGTGAAGAGGTGAAGAAGCAACTGGCGTTAGCTGGACCTCTAACAATTGTTGGTGTTTTGCGATACTTGACACAGGCTGTGTCTTTGATGTTTGTGGGTCATCTTGGAGAATTACCTCTCGCAAGTGCTTCCATGGCTGCTTCCTTTGCTTCCGTCACTGGTTTCAGCCTTTTGATTGGAATGGGAAGCGCATTGGACACCTTGTGTGGTCAGGCCTATGGAGCAAAACATTATCACATGCTCGGCATTCATATGCAGAGAGCCATGTCTGTTCTTTTACTTGTAAGTGTTCCTCTGGCTTTCATCTGGGCCAAAACTGAGCACATTCTTATGAACCTTGGCCAAGATCCATATATTTCAAGGGGAGCTGGGCGGTATGTTTGGTTCATGATGCCTACACTATTTTCCTGTGGAATTCTACAATGCCTTGTTAGATTTTTGCAAACTCAGAAGATTGTATTTCCAGTGATGCTAATCTCAGCAATTACTACTTTATTTCACTTCCCCACTTGCTGGATCCTGGTTTTCAAGACTAGCCTCGGCAGTGCAGGTGCTGCCTTGGCCTGTTCAATCTCTTCTTGGATCAACGTGTTCCTGTTAGTACTTTATGTCAAGTTCTCACCTGCCTGCAAGCAAACTTGGACTGGCGTTTCTGAAATGAATATTCAAGATGTCCTTAGCTTTCTAAGATTAGCCGTTCCTTCAGCCTCTATGGTCTGTTTAGAGTTCTGGTCATTTCAAGTGTTGATTCTCATTGCTGGTATTCTTCCTAATCCTCAGCTGGAAACATCAGTATTGTCAATCATCCTCACTACATGTGCAATGTTGTTCAATATATACTTGGGAATAGGCAGCGCTGGGAGTATAAGGATTTCAAATGAATTGGGCGCTGGGCGACCACAAAAAGCATACTTGGCAGTACATGCTGTGCTAATCCTGGCCAATGTGTTCGGAATGCTGCTTGGGTCGATCATGTTTTTGTTGCGTCGTACTTGGGGCTACTTGTTTAGCAATAAAGAGGAAGTAGTGAAATATGTTGCCTCCATGATGCCTTTGCTAGCTACTTCAGCCTCATTGGATGCAATCCAGTGTGCACTTTCAGGTATTGTTAGAGGATGTGGGTGGCAGAAGATCGGAGCCATTGTCAATCTGGGAGCTTATTACCTTGTTGGTATCCCTTGTGCTCTTCTTTTTACATTTGACTTTGGCCTTGGAGGGAAGGGGCTTTGGATGGGGATTCTATGCGCGCTCTTTCTGCAAATGTTGTGTCTTCTTGTTGTGACTTTACAAACTAATTGGGAGCAACAGGTAATTGAATTGATTTTTCATTTTGTATCAAAAGTTGATTTAACGGGAGTTCTCAATTGTCTCTCCACGCGCGGACATGGCATGCTGTTTTGGATGGCACTGGAGATGATGTGGGTTGATGGTATGAGAGGAGACTTGTCACGCCCCAAGACCCACTCCAAGGGCGTGACGGGGCTCTGGTCGGGTATCATATGTGCACTCATAGTCCAAATGTTCTCTTTTCTCACCATCACCCTAAGCACTAAGTGGGAGCAGGAGATAAACCAGTCTTTCCCTACTTTCGCTTTAAAAGATAACTGGTTATATATGAAGAAGCATTACCTGAGCATGCATGATCTCTGTGTGAAGGCGAAGATGGATAGAGAGGATGAGAAGCCAACTCTGAGGTCTCCACTGATCCAAAAATGTGGACAAGATGGCGGAGGAATAAGCATGGAAAAGGTTCTTCTGAGGGAGAAGGTAGTAGTAGAAGTGAAGAAGCAGTTGTGGTTGGCAGGACCTTTGATATCCGTCAGCCTATTGCAGCAGTGTTTGGAGGTGATATCACTGATGTTTGTGGGTCATCTGGGTGACTTGTCTCTCTCGGCTGCTTCCATGGCTACTTCCTTTGCATCTGTCACTGGGTTCAGCTTGTTGATGGGGATGGCAAGTGCATTGGATACCTTATGTGGGCAGTCCTATGGAGCAAAGCAATATCATATGCTCAGTATACACATGCAGAGGGCCATGCTTATTCTTCTAATTGTTAGCATACCTCTTGCTACCATTTGGGCATATACAGGAACCATTCTAATGGCCGTGGGCCAAGATCCTGAGATATCACAAGAAGCCGAACTTTATGCCCGTTTCATGATCCCGAGCCTCTTTGCCTATGGCCTCCTTCAGTGCCTTGTCAGATTCTTGCAAACCCAAAACATAGTCTTCCCAATGATGCTGAGCTCTGGAATCACAACCTTACTGCATGTTCTGGTGTGCTGGTTTCTGGTTTTCAAATCTGGCCTCGGAAGTAAAGGGGCTGCTTTGGCAAATAGCATCTCCTGTTGGATAAATGTTTTATTGCTGGCACTATATGTTAAATTCTCTTCTTCTTGCTCGAAAACTAGGACTGGATTTTCAAAGGAGGCCCTGCATAATATCCCTAGTTTTCTTAGACTTGCTATTCCTTCTGCTGTTATGGTCTGCTTGGAAATGTGGTCATTTGAGCTGATGGTTCTTCTATCTGGTCTCCTTCCTAATCCAAAGTTACAGACTTCAGTGCTTTCGATCTGCCTTTATACTGCTGCAACAGTTTGGATGATCCCCTTTGGACTCAGTGGAGCTGTGAGCACAAGGGTCTCAAATGAACTTGGGGCAGGGCATCCACAAGCTGCACGTTTAGCAGTATTTGTCGTCTTAGTCATGGCCCTAGCTGAAGGCACTCTCATTGGACTACTTCTGATATTGATAAGGAACATCTGGGGCTATGCCTACAGCAATGAAATAGAAGTGGTCACATATGTAGCAGCCATGATGCCAATTCTTGCATTATCCAACTTCCTAGATGGAATGCAGTGTGTTCTTTCAGGCACTGCTAGAGGATGCGGTTGGCAGAAGATTGGTGCCTTTGTCAATCTAGGATCATATTATCTTGTGGGAATTCCATGTGCTATTTTATTAGCTTTTGTCTTCCACATTGAAGGAAGGGGCCTCTGGTTGGGGATTATATGTGGGCTCATAGTTCAAGTGTCGTCCCTTCTTATCATAACCCTACGCACTAACTGGGAGGATGAAGCAAAGAAGGCTACAGATAGAGTCTATGACGCTATAATCCCTGTTGAGACAGTGCATTGA 3219 44.7 MDSEEEILSPCVSDSDVDDKDLWRVEIGEEVKKQLALAGPLTIVGVLRYLTQAVSLMFVGHLGELPLASASMAASFASVTGFSLLIGMGSALDTLCGQAYGAKHYHMLGIHMQRAMSVLLLVSVPLAFIWAKTEHILMNLGQDPYISRGAGRYVWFMMPTLFSCGILQCLVRFLQTQKIVFPVMLISAITTLFHFPTCWILVFKTSLGSAGAALACSISSWINVFLLVLYVKFSPACKQTWTGVSEMNIQDVLSFLRLAVPSASMVCLEFWSFQVLILIAGILPNPQLETSVLSIILTTCAMLFNIYLGIGSAGSIRISNELGAGRPQKAYLAVHAVLILANVFGMLLGSIMFLLRRTWGYLFSNKEEVVKYVASMMPLLATSASLDAIQCALSGIVRGCGWQKIGAIVNLGAYYLVGIPCALLFTFDFGLGGKGLWMGILCALFLQMLCLLVVTLQTNWEQQVIELIFHFVSKVDLTGVLNCLSTRGHGMLFWMALEMMWVDGMRGDLSRPKTHSKGVTGLWSGIICALIVQMFSFLTITLSTKWEQEINQSFPTFALKDNWLYMKKHYLSMHDLCVKAKMDREDEKPTLRSPLIQKCGQDGGGISMEKVLLREKVVVEVKKQLWLAGPLISVSLLQQCLEVISLMFVGHLGDLSLSAASMATSFASVTGFSLLMGMASALDTLCGQSYGAKQYHMLSIHMQRAMLILLIVSIPLATIWAYTGTILMAVGQDPEISQEAELYARFMIPSLFAYGLLQCLVRFLQTQNIVFPMMLSSGITTLLHVLVCWFLVFKSGLGSKGAALANSISCWINVLLLALYVKFSSSCSKTRTGFSKEALHNIPSFLRLAIPSAVMVCLEMWSFELMVLLSGLLPNPKLQTSVLSICLYTAATVWMIPFGLSGAVSTRVSNELGAGHPQAARLAVFVVLVMALAEGTLIGLLLILIRNIWGYAYSNEIEVVTYVAAMMPILALSNFLDGMQCVLSGTARGCGWQKIGAFVNLGSYYLVGIPCAILLAFVFHIEGRGLWLGIICGLIVQVSSLLIITLRTNWEDEAKKATDRVYDAIIPVETVH* 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2767984 2782669 - Vvi17g256 Vvi17g256 778953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g256 1072 TIGRFAM matE: MATE efflux family protein 40 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g256 1072 TIGRFAM matE: MATE efflux family protein 630 1027 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g256 1072 CDD MATE_eukaryotic 30 464 IPR045069 GO:0042910|GO:1990961
Vvi17g256 1072 Pfam MatE 851 1013 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g256 1072 Pfam MatE 261 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g256 1072 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g256 1072 Pfam MatE 630 789 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g256 1072 PANTHER PROTEIN DETOXIFICATION 612 1060 - -
Vvi17g256 1072 PANTHER PROTEIN DETOXIFICATION 21 470 - -
Vvi17g256 1072 CDD MATE_eukaryotic 620 1056 IPR045069 GO:0042910|GO:1990961
Vvi17g256 1072 PANTHER MULTIDRUG RESISTANCE PROTEIN 612 1060 - -
Vvi17g256 1072 PANTHER MULTIDRUG RESISTANCE PROTEIN 21 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g256 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100252666 917.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g256 . . . . . . . . . . . Cma11g00296 . . . . Cpe04g01386 Bhi02g00113 . . . . . . . . . . . . . . . . . . . . . . Blo15g00062 . . . . . . . Cmo10g00339 Cmo11g00301 . . . . . . . . . . . . . . . . . . . . . Csa01g00418 Chy02g02328 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153