Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g26 ATGCAGCTGGCCAAACTTGACGATTCTCCCATGCTTCGCAACCAAATTGAGTGCTTGGAGGAGAATGCTGAGTCATTGAAGGAAAGAACAATGAAGTTCTACAAAGGCTGCCGAAAGTACGCAGAAGGACTTGGAGAGGGATACAATGGAGATGTTGCTTTTGCAAACGCCCTTGAAGCCTTTGGAGGCTGCCATAATGATCCTCTTAGTGTTGCTTTTGGGGACTCTGTTGTCAAAAAATTCACAGGTGCTTTGAGAGAAATTGGGACATACAAGGAAACCCTTCGGGCAGAGGTAGAGCACGTTCTAACTGATAGGTTGCTACACTTTGTTGATGTTGATCTGCATGATGTCAAGGAAGCCCGAAAACGTTTTGACAAGGCTATCCCTATGTATGACCAGGCACGTGAGAAATTTCTATCATTAAGGAAAAGTACTAGAATGGATATAGCTCAAGCCACAGAGGAGGAACTTCACAATGCAAGGTCCATATTTGAGCAAGCCCGGTTCAATCTGGTCAGTGCTATCTCTAATGTCGAGGCAAAAAAGAGGTTTGAGTTTTTGGAGGCTGTCAGTGTAACAATGGCTGCACATCTTCGTTTCTTCAGACAGGGATATGAGCTATTGAATCAGATGGAGCCTTATATTAACCAGGTCTTGGGTTATGCACAACAGTCAAGGGAAAGTTCCAACTATGAGCAAGCATCTCTTATTGAAAAAATGCAAGACTACATAAGGCAAATTGATTACAAAAGTAAACTGGCTCTAAATGGATCTTATGCTTCTCCCAATGATGTTGGTATGCAACCTTTCAATAGAAAATCGCATAAAGAGATAGAAGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACCATTCGACAAGGATATCTTTCAAAACGTTCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGCCGAGGCATGTTGTACTACTATCGCAAACAATGGAACAGGTCATTTGTAAGTCATTATCTGGAAGACATTTTTCAACATTCCAATGAGCCTGGTTCTGGGCTGCTGAGTCGCTGGCTATCTTCTCATTACCATGGTGGTGTACATGATGAGAAATCTGTCACACAGCACACTGTGAACTTACTGACAGCAACAATAAAGCTTGATGCAGATCAGTCAGATTTGAGGTTCTGCTTCAGGATCATTTCACCAACAAAGAACTATACTTTGCAGGCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGGCGTCTCTCTGGTTCTTCAACTGGAAGCAGCGATCAACAGCCTGCTAACCAAAGTTGTTCACCAGGAAGTTCATCTCATTTGGATCAGACTGTAATTGAAGAGCATGCGTCTAAGAATCTTACTTCTGGAAACTATGCGCGTGCATCTAGAAGTCTGCAACAGCGAAAATGCAGTGGAAAAAATGAGAAGCCAATTGATGTGTTGAGAAGAGTACGTGGGAATGACAAATGTGCTGATTGTGGTGCACCTGAACCTGATTGGGCATCCTTAAATCTGGGTGTTCTTATCTGCATCGAATGCTCTGGCATTCACCGTAATCTTGGTGTGCATATATCAAAGGTTAGATCACTGGTACTTGATGTAAAAGTGTGGGAACCTTCTGTTCTGACATTGTTCCTGGCACTGGGTAATAACTACGCAAATTCAATCTGGGAGGACTTGTTGAATCCTGATGATACGCCTGTGGATTCCCCGACATCTGATAAATCCAAGCTGTCGCTTATGAGCAAACCTGGTCATGATGATCCTATTTCAGTAAAGGAGATTTTCATTCATGCAAAGTATGCAGAAAAACGTTTTGTTCGCAAGATAAAGGACAGTCAGCATCTTCATTCAATTGCACAAAAAATGTGCAGAAGTGTGCGTTATAATGACACGAAAGCAGTTTACCGCAATATTGTCAGTTCTGAAGTTGATGTCAATGCTATCCATGGGAAAGCATCATCTAACACGTTCTTAACTCTAGCTGAAGTAATGAAGTTGCAAGAGCAGGTCAGCGTCGATAATAAATTTGATTTCTTAGTAGATAGTTCTTTGGGTAAGGCGTCCTCAAGCTCTTCAGACAAACCCAGTACAACCGAAGATCAGTCCATGGAGGGGTGTCATGATGGTTGTTCGCTACTTCACCTTGCATGCCAAGCTGCAGACATTGGTATGGTGGAGCTACTTCTACAGTATGGAGCAGACATAAATGCTTCTGATTCTATGGGTCAGACCCCTCTGCATCATTGCATCATCAGAGGGAGAACTGCAATTGCAAAAATACTGCTGAAAAGGGGAGCTGATCCACAAGCTGTAGACAAGGAAGGTAAAACCCCTCTTCGGCTCGTAGCTGAATCAACCATTGATGACAGCGAGGTCCTAGCACTCTTAAAGCAAACAAACAGATGA 2484 42.79 MQLAKLDDSPMLRNQIECLEENAESLKERTMKFYKGCRKYAEGLGEGYNGDVAFANALEAFGGCHNDPLSVAFGDSVVKKFTGALREIGTYKETLRAEVEHVLTDRLLHFVDVDLHDVKEARKRFDKAIPMYDQAREKFLSLRKSTRMDIAQATEEELHNARSIFEQARFNLVSAISNVEAKKRFEFLEAVSVTMAAHLRFFRQGYELLNQMEPYINQVLGYAQQSRESSNYEQASLIEKMQDYIRQIDYKSKLALNGSYASPNDVGMQPFNRKSHKEIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQWNRSFVSHYLEDIFQHSNEPGSGLLSRWLSSHYHGGVHDEKSVTQHTVNLLTATIKLDADQSDLRFCFRIISPTKNYTLQAENALDQMDWVEKITGVIASLLSSDALERRLSGSSTGSSDQQPANQSCSPGSSSHLDQTVIEEHASKNLTSGNYARASRSLQQRKCSGKNEKPIDVLRRVRGNDKCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLVLDVKVWEPSVLTLFLALGNNYANSIWEDLLNPDDTPVDSPTSDKSKLSLMSKPGHDDPISVKEIFIHAKYAEKRFVRKIKDSQHLHSIAQKMCRSVRYNDTKAVYRNIVSSEVDVNAIHGKASSNTFLTLAEVMKLQEQVSVDNKFDFLVDSSLGKASSSSSDKPSTTEDQSMEGCHDGCSLLHLACQAADIGMVELLLQYGADINASDSMGQTPLHHCIIRGRTAIAKILLKRGADPQAVDKEGKTPLRLVAESTIDDSEVLALLKQTNR* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 201291 212911 + Vvi17g26 Vvi17g26 778723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g26 827 ProSiteProfiles Ankyrin repeat region circular profile. 767 799 - -
Vvi17g26 827 SUPERFAMILY ArfGap/RecO-like zinc finger 499 634 IPR037278 -
Vvi17g26 827 CDD BAR_SFC_plant 15 215 IPR035670 -
Vvi17g26 827 Gene3D Arf GTPase activating protein 481 636 IPR038508 -
Vvi17g26 827 Pfam PH domain 294 427 IPR001849 -
Vvi17g26 827 SUPERFAMILY Ankyrin repeat 732 812 IPR036770 -
Vvi17g26 827 SMART arf_gap_3 500 639 IPR001164 GO:0005096
Vvi17g26 827 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Vvi17g26 827 SMART 5bar 1 218 IPR004148 GO:0005515|GO:0005737
Vvi17g26 827 CDD PH_ACAP 295 432 - -
Vvi17g26 827 MobiDBLite consensus disorder prediction 710 729 - -
Vvi17g26 827 Pfam BAR domain of APPL family 6 231 - -
Vvi17g26 827 SUPERFAMILY PH domain-like 293 445 - -
Vvi17g26 827 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 639 IPR001164 GO:0005096
Vvi17g26 827 PANTHER CENTAURIN/ARF 1 826 IPR045258 GO:0005096
Vvi17g26 827 SMART ANK_2a 767 796 IPR002110 GO:0005515
Vvi17g26 827 SMART ANK_2a 734 763 IPR002110 GO:0005515
Vvi17g26 827 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vvi17g26 827 SMART PH_update 293 430 IPR001849 -
Vvi17g26 827 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Vvi17g26 827 Coils Coil 9 29 - -
Vvi17g26 827 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Vvi17g26 827 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Vvi17g26 827 Gene3D - 285 441 IPR011993 -
Vvi17g26 827 MobiDBLite consensus disorder prediction 440 465 - -
Vvi17g26 827 Gene3D - 637 825 IPR036770 -
Vvi17g26 827 ProSiteProfiles Ankyrin repeat profile. 767 799 IPR002110 GO:0005515
Vvi17g26 827 Pfam Putative GTPase activating protein for Arf 503 633 IPR001164 GO:0005096
Vvi17g26 827 Pfam Ankyrin repeats (3 copies) 739 811 IPR002110 GO:0005515
Vvi17g26 827 CDD ArfGap 503 626 - -
Vvi17g26 827 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vvi17g26 827 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 826 - -
Vvi17g26 827 ProSiteProfiles Ankyrin repeat region circular profile. 734 765 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g26 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - vvi:100254173 1575.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1342 Vvi17g26 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42