Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g260 ATGCTTATCCGCAACAAAGATGAGCAAGAAGTGGTCTCAACAGAGAAAAAGGACAGACGTGATTTTGAGCAAATTTCAGCACTGGCAACCAGAATGGGCTTATATAGCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAGGTGGTGTTACCTTTTGGGTTGCAAAGAGAAGTACATGCTCATCTTAAAGAATACCTTTCTCAAAAGTCTATGAGCAGGGAAAGTTTTTCAGATAAGACCTTGTCAAGGTCAATTGGTAACAGCAGTGTTACTGAGGAGGGATTTTATGAGCAACAGGAGCCCTTGACACAGACTAGTGTCGTCATGGAACGAATCCTCAAACGGAAAAGTTTGCAAATACGTAATCAACAACAAGATTGGCAGGAATCTTCAGAAGGCCAAAAGATGCAAGAGTTTCGCAGAAGTCTCCCTGCATACAAAGAGAGAGAGGCATTATTAAATGCCATTTCACAAAATCAGGTGGTTGTAGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTCCCTCAGTACATTTTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTTCTGTAGTATTATTTGTACTCAGCCTAGACGAATATCAGCTATGTCTGTCTCTGAAAGAGTTGCTGCAGAGAGAGGTGAAAAACTGGGAGAATCTGTTGGTTATAAAGTTCGGCTGGAGGGAATGAAAGGGAGGGACACTCGCCTTCTTTTTTGCACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTCCTTATTGTCCTAAAAGACCTGCTTCCTCGTCGGCCAGAATTGAGGCTGATTCTGATGAGTGCAACTCTTAATGCTGAGCTTTTTTCCTCCTACTTTGGTGGTGCTCCAAGTATCCATATTCCTGGGTTTACGTACCCAGTACGAACTCATTTTCTGGAAAATATTCTGGAAATGACTGGATATAGATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAAGGTGTGGAAAATGCAGAAACAAGCTCTCAGAAAGAGAAAGAGCCAAATTGCTTCCTCGGTTGAGGATGCACTTGAAGTTGCTAATTTTGATGCATATAGCCCACGGACACAAGACTCTTTATCCTGTTGGAATCCTGATTCTATTGGTTTTAACCTTATCGAACATGCTCTTTGCCACATAGTTAAAAAAGAAAGACCTGGTGCTGTCTTGGTTTTCATGACTGGTTGGGATGACATAAATTCTTTGAAAGATCAGCTCGAAGCTCATCCTCTCTTGGGAGATCCAAGCAGAGTTTTGCTGCTTGCATGCCATGGTTCCATGGCCAGCTCAGAGCAGAGGTTAATATTTGATAAGCCGGAAGATGGAGTAAGGAAAATAGTTCTTGCTACCAACATGGCTGAGACTAGTATCACCATTAATGATGTGGTTTTTGTGGTCGATTGTGGAAAGGCAAAAGAGACGTCATACGATGCTCTGAATAACACTCCTTGTTTACTTCCTTCTTGGATCTCAAAGGCTTCTGCTCGACAAAGAAGAGGAAGAGCGGGTCGTGTACAACCTGGTGAATGTTACCATCTGTATCCAAAATGTGTATATGATGCTTTTTCTGATTACCAATTGCCAGAACTTCTAAGGACACCTTTACAGTCCCTTTGTTTGCAAATCAAGAGTTTGCAACTTGGAAGTATTTCAGAATTCCTGGCCAGGGCCTTGCAGCCACCAGAACCCTTATCGGTTCAAAATGCCATCGAGTATTTGAAGACCATTGGGGCTTTAGATGAGAATGAGAATTTGACAGTGTTAGGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGCTGGTCTTAGTGTTAGAGATCCGTTCTTGATGCCATTTGACAAGAAGGATCTTGCAGAATCAGCAAAAGCTCTTTTCTCAGGCCGCACCTTCAGTGACCATCTTGCACTTGTCCAAGCCTATGAGGGCTGGAAAGAGGCTGAAAGACAGCAATCTGGATACGAGTACTGTTGGAGAAATTTCCTTTCTGCACAAACTCTAAAAGCTATTGATTCCCTTCGAAGGCAATTCTTTTATTTGCTCAAGGATGCTGGTCTGGTTGAAAACAACACAGAAGCATGCAATAAGTGGAGCCATGATGAGCATCTCATTCGAGCAGTCATTTGTGCAGGCCTGTTCCCTGGGATATGCTCTGTTGTTAACAAGGAAAAATCAATATCATTGAAAACGATGGAGGATGGTCAAGTTCTTCTGTACTCGAATTCGGTGAATGCCCGGGAACCTAAAATTCCATACCCGTGGTTAGTTTTCAATGAAAAGGTGAAGGTGAATTCAGTTTTCCTCCGTGATTCCACTGCTGTATCTGATTCTATGCTTCTTTTATTTGGAGGACGTATTTCCAGAGGGGGAATTGATGGACACCTGAAAATGTTGGGAGGATATTTGGAGTTCTTCATGAAACCTGACTTAGCAGATACATATCTGAGCCTCAAGAAAGAGCTTGAAGAACTAATTCAACAGAAACTTCTGAATCCAACACTGGATGTACACACCAATAATGAGCTGCTATCTGCAGTAAGATTACTGGTTTCAGAGGATGAATGCAATGGCAGGTTTGTCTTTGGCCGCCAGTTGCCTAAGTCTTCAAAACAGGCGATAAAAGAGACCTCGGCTGGTGCACTCTTGAGAAGTGGTGGAGCTGGGGGTGATAATGCAAAGGGTAGGCTGCAAACTGTACTTATCAGGGGTGGACATCAGGCACCAGTCTACAAGACGAGACAACTGAAAAATAACATGTTCCGGTCCACTGTGATCTTCAACGGATTGCAGTTTGCGGGGCAGCCTTGCAGCAGTAAGAAACTTGCGGAAAAGGATGCAGCAGCCAAAGCTCTGGAATGGTTGATGGGCGAGAGACAATCATCCACTGAAGACATTGACCATATGTCAATGCTTCTAAAAAAGAGCAAAGGGAAACGTCGGAAGAGAACTTAA 3174 42.66 MLIRNKDEQEVVSTEKKDRRDFEQISALATRMGLYSCQYSRVVVFSKVPLPNYRSDLDDKRPQREVVLPFGLQREVHAHLKEYLSQKSMSRESFSDKTLSRSIGNSSVTEEGFYEQQEPLTQTSVVMERILKRKSLQIRNQQQDWQESSEGQKMQEFRRSLPAYKEREALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGAFCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPSIHIPGFTYPVRTHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQALRKRKSQIASSVEDALEVANFDAYSPRTQDSLSCWNPDSIGFNLIEHALCHIVKKERPGAVLVFMTGWDDINSLKDQLEAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPKCVYDAFSDYQLPELLRTPLQSLCLQIKSLQLGSISEFLARALQPPEPLSVQNAIEYLKTIGALDENENLTVLGRNLSMLPVEPKLGKMLIFGSLFNCLNPIMTVVAGLSVRDPFLMPFDKKDLAESAKALFSGRTFSDHLALVQAYEGWKEAERQQSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVENNTEACNKWSHDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPKIPYPWLVFNEKVKVNSVFLRDSTAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPDLADTYLSLKKELEELIQQKLLNPTLDVHTNNELLSAVRLLVSEDECNGRFVFGRQLPKSSKQAIKETSAGALLRSGGAGGDNAKGRLQTVLIRGGHQAPVYKTRQLKNNMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALEWLMGERQSSTEDIDHMSMLLKKSKGKRRKRT* 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2821873 2869660 - Vvi17g260 Vvi17g260 778957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g260 1057 SMART helicmild6 453 559 IPR001650 -
Vvi17g260 1057 CDD SF2_C_RHA 416 567 - -
Vvi17g260 1057 Pfam Double-stranded RNA binding motif 966 1028 IPR014720 -
Vvi17g260 1057 Pfam DEAD/DEAH box helicase 170 322 IPR011545 GO:0003676|GO:0005524
Vvi17g260 1057 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 778 860 IPR011709 -
Vvi17g260 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 599 IPR001650 -
Vvi17g260 1057 Pfam Helicase associated domain (HA2) 622 710 IPR007502 GO:0004386
Vvi17g260 1057 SUPERFAMILY dsRNA-binding domain-like 961 1028 - -
Vvi17g260 1057 SMART DRBM_3 966 1029 IPR014720 -
Vvi17g260 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 735 IPR027417 -
Vvi17g260 1057 Gene3D - 113 339 IPR027417 -
Vvi17g260 1057 Gene3D - 601 702 - -
Vvi17g260 1057 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 1 973 - -
Vvi17g260 1057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 338 IPR014001 -
Vvi17g260 1057 Gene3D - 942 1034 - -
Vvi17g260 1057 Gene3D - 418 577 IPR027417 -
Vvi17g260 1057 Pfam Helicase conserved C-terminal domain 429 558 IPR001650 -
Vvi17g260 1057 PANTHER ATP-DEPENDENT RNA HELICASE 1 973 - -
Vvi17g260 1057 SMART ha2_5 621 712 IPR007502 GO:0004386
Vvi17g260 1057 SMART ultradead3 159 352 IPR014001 -
Vvi17g260 1057 CDD DEXHc_RHA-like 177 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g260 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - vvi:100244105 2021.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g379 Vvi17g260 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70