Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g262 ATGGCCGTTCCGGTGGAACTCTCCGACCGCGAATCATTGATTAAATCCGCCAGCACTTCGCTTAACAGCAAGGTTGTGAGTCACACAGCTGGCGGGCCGACCCGGGTGGAGAACGCTAAGATTGCAGTGATTCAGTTCCAGATTTCGCCTCCAAAGACTGATATTGAGCAGAGTATTGTAGTTTCCGATTATACCCAAATGGACCGGATATTGAAAGAAGAGAGAAATTATATTCTAGGTATGATTAAGAAGATTAAGGCCACTGGCTGTAACGTTCTGCTGATTCAGAAGAGTATATTGAGAGATGCAGTGACGGATCTCTCGTTGCATTATCTTGCTAAAGCAAAGATTTTGGTGATAAAGGATGTGGAGCGTGATGAAATTGAGTTCATTACAAAGACTCTGAATTGTTTGCCAATTGCAAATATTGAGCATTTCAGGGCAGAGAAGTTGGGTTTTGCGGATTGTGTTGAGGAGGTTTCACTTGGAGATGGGAAGATTGTGAAAATCACTGGCATTAAGGATATGGGTCGGACCACGACTGTGCTTGTTCGTGGGTCGAATATGTTGGTTCTAGATGAGGCAGAACGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGCTTGGTGAACAAGAGGTTTTTGATTGCTGGTGGTGGTGCTCCAGAGATTGAGCTATCGAGGCAGCTTGGTGCTTGGGCAAAGGTGTTGCAGGGAATGGAGAGCTACTGTGTCCGGTCATTTGCAGAGGCTCTTGAAGTTATTCCTTATACCTTGGCTGAGAACGCAGGCTTGAACCCAATATCTATTGGACAGATTACAAACATCTTGGAGGAGAATGTGGTGCAGCCACTGCTGGTGAGCACAAGTGCTATCACTCTGGCAACAGAGTGTGTGCGGATGATTTTGAAGATCGATGATATTGTTACAGTGAGGTAG 939 45.58 MAVPVELSDRESLIKSASTSLNSKVVSHTAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGFADCVEEVSLGDGKIVKITGIKDMGRTTTVLVRGSNMLVLDEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLQGMESYCVRSFAEALEVIPYTLAENAGLNPISIGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2871427 2872600 + Vvi17g262 Vvi17g262 778959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g262 312 Gene3D - 178 213 IPR027410 -
Vvi17g262 312 SUPERFAMILY GroEL equatorial domain-like 213 310 IPR027413 -
Vvi17g262 312 SUPERFAMILY GroEL apical domain-like 27 186 IPR027409 -
Vvi17g262 312 PANTHER CHAPERONIN 27 310 IPR017998 GO:0140662
Vvi17g262 312 Gene3D GroEL 31 177 IPR027409 -
Vvi17g262 312 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 27 310 - -
Vvi17g262 312 Pfam TCP-1/cpn60 chaperonin family 33 270 IPR002423 GO:0005524
Vvi17g262 312 PRINTS Tailless complex polypeptide 1 (chaperone) signature 181 203 IPR017998 GO:0140662
Vvi17g262 312 PRINTS Tailless complex polypeptide 1 (chaperone) signature 215 227 IPR017998 GO:0140662
Vvi17g262 312 Gene3D - 214 269 IPR027413 -
Vvi17g262 312 Gene3D - 271 309 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g262 K09496 CCT4; T-complex protein 1 subunit delta - vvi:100262936 543.888
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008900 2 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 2 34