Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g264 | ATGAATCCTACTTCAATCCATGCTATTAAGCTTAATCTCTACAAATGCCCACTCTCATTAACAGTTTTGCGCTTCATCCTTATACCAAAATTTCCCTATTCTTCTTCTTCTTCTTCATCTCTGCAAACCCTTAACCAATCTCAAACCAATTCAATCTCAAACTCACTCTATCACCTTCTCCCCCAAACCCAAAACCCCAACAACATTGTCAATCTCATCTGCTCTAATCTCAAGCAACACAATTCCAATCTTGCCCTTCTTCACACAGAAGTGAACGCGCTTCTCCCTCATCTGGGCGCCCAGGAAATTTCTAGGGTTCTGTTGAGATGCCAATCTGATTCCTTCACGGCTCTCTCTTTCTTCAATTGGGTAAAAAATGATCTGGGTCTGAGACCCAGTACCCAGAACTATTGTATTGTCGTTCATACGTTGGCATGGTCTAGGAATTTTTCCCAAGCAATGAAATTTTTATGTGAATTGGTGGAGTTGGTTAAGGATGATTTGCCCAGTGAAGATGTTTTCAAAAATTTGATTTTGTGTACTGAAGATTGTAATTGGGACCCTGTTGTCTTCGATATGCTTGTTAAGGCCTATCTGAGAATGGGGCGGGTTCGAGAGGGTTTAAGAAGTTTTAGGAGGATGTTAAGGGTTGGTTTTGTCCCCACTGTGATTACCTCAAATTATCTTTTGAATGGATTGTTGAAGCTGAATTATACTGATCGGTGTTGGGAAGTTTATGAAGAAATGGAAAGATTTGGGATAGCTCCAAATTTGTATACATTTAATATTTTGACTCACGTTCTATGCAAGGATGGGGATACAGGTAAGGTGAACAAGTTCTTAGAGAAGATGGAAGAAGAAGGGTTCGACCCTGATATTGTGACTTATAATACACTGATAAATAGCTATTGTAGGAAAGGAAGGCTGGATGATGCATTTTATCTGTATAAGATCATGTATAGGAGGGGTGTGGTGCCAGATTTGGTATCATATACTGCCTTGATGAATGGTCTTTGTAAAGAAGGGAGGGTGAGAGAAGCTCATCAGCTCTTCCATAGGATGGTTCATAGAGGGCTGAGTCCAGATATTGTAACATACAACACTCTTATTCATGGTTATTGCAAGGAGGGAAAGATGCAAGAATCAAGGTCATTGTTGCATGACATGATATGGAATGGGATCTCTCCAGACAGTTTCACTTGTTGGGTACTTGTGGAAGGATATGGGAAAGAGGGTAAATTTCTTTCAGCTTTGAATTTGGTTGTGGAGCTTCAGAGATTTGGAGTTTCAATATCACAGGATATTTATTCTTACCTAATAGTGGCTTTGTGTCGGGAGAATCGGCCTTTTGCAGCCAAGAACCTTTTGGAGAGAATGTCTAAAGATGGCCACAAGCCTGAGTTGGAGATTTATAATGAGTTAATCAAATCATTCTGCCAATGTGATTGTATAGCAGAGGCTTTACTACTGAAAATGGAGATGGTAGATAAGGAAATAAAGCCCAATTTAGCTACTTATAGAGCTGTTATAGGCTGCTTGAGTAGATTAAGTAGAAGTATGGAGGGTGAATCATTAGTGGGTGAAATGGTTGCATCTGGCATGCTACCTGATTTGGAAATTTGCAGGGCTTTATTTTATGGGTACTGCAGGGAAAATGATATTGATAAAGCAGAATCACTATTGAGCTTCTTTGCCAAGGAATTCCAAATTCATGACACAGAAAGTTTTAATGCACTTATCAGAATTACCAGTGCAAAGGGTGACATTGCTAGGTCATTGGAGATCCAGGATATGATGCTGAAAATGGGGCTTTTGCCAAATCCACTGACATGCAACCCGTTTGCCATCCTTACCAGCAGACTTCGCGTAGATGTTAAAGCTGCCAACATGGCCATATTTGATGGCATGAATGCATCTAGTCTCTGGGGGGATAACGAGTCTCTTGAGGAAAATGCCCTTCAGGTACTGCTGGGAAAACTTTAG | 1983 | 40.44 | MNPTSIHAIKLNLYKCPLSLTVLRFILIPKFPYSSSSSSSLQTLNQSQTNSISNSLYHLLPQTQNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGAQEISRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCNPFAILTSRLRVDVKAANMAIFDGMNASSLWGDNESLEENALQVLLGKL* | 661 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2882629 | 2888851 | - | Vvi17g264 | Vvi17g264 | 778961 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g264 | 660 | Pfam | PPR repeat | 189 | 219 | IPR002885 | - | |
| Vvi17g264 | 660 | Pfam | PPR repeat | 543 | 561 | IPR002885 | - | |
| Vvi17g264 | 660 | Pfam | PPR repeat | 435 | 463 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 327 | 361 | IPR002885 | - | |
| Vvi17g264 | 660 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 20 | 616 | - | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 432 | 466 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 292 | 326 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 329 | 363 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 189 | 223 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 505 | 537 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 364 | 398 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 259 | 293 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 294 | 327 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 470 | 502 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 435 | 466 | IPR002885 | - | |
| Vvi17g264 | 660 | TIGRFAM | PPR: pentatricopeptide repeat domain | 227 | 257 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 222 | 256 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 502 | 536 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 362 | 396 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | IPR002885 | - | |
| Vvi17g264 | 660 | SUPERFAMILY | HCP-like | 232 | 419 | - | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 572 | 606 | IPR002885 | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 257 | 291 | IPR002885 | - | |
| Vvi17g264 | 660 | Pfam | PPR repeat family | 470 | 513 | IPR002885 | - | |
| Vvi17g264 | 660 | Pfam | PPR repeat family | 291 | 340 | IPR002885 | - | |
| Vvi17g264 | 660 | Pfam | PPR repeat family | 221 | 270 | IPR002885 | - | |
| Vvi17g264 | 660 | Pfam | PPR repeat family | 361 | 409 | IPR002885 | - | |
| Vvi17g264 | 660 | Gene3D | Tetratricopeptide repeat domain | 284 | 390 | IPR011990 | GO:0005515 | |
| Vvi17g264 | 660 | Gene3D | Tetratricopeptide repeat domain | 107 | 283 | IPR011990 | GO:0005515 | |
| Vvi17g264 | 660 | Gene3D | Tetratricopeptide repeat domain | 519 | 623 | IPR011990 | GO:0005515 | |
| Vvi17g264 | 660 | Gene3D | Tetratricopeptide repeat domain | 405 | 518 | IPR011990 | GO:0005515 | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 397 | 431 | IPR002885 | - | |
| Vvi17g264 | 660 | PANTHER | OS01G0546700 PROTEIN | 20 | 616 | - | - | |
| Vvi17g264 | 660 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 467 | 501 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g264 | - | - | - | vvi:100852903 | 1216.06 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g264 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012980 | 0 | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 28 |