Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g265 ATGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATGTCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAGGCAATCCAGTGATACAGAGAATGAGAAGCAAGCAACCAATCGTCAGATTAGCGATTGGCTTGGAAAGCTCAAACTCGTCCTTTATGATGCAGAGGATGTGCTCGATGAATTTGACTATGAAGCTTTGCGGCAGCAGGTGGTGGCCAGCGGATCAAGCATTACGTCAAAGGTACGCAGTTTCATTTCAAGTTCAAAATCGCTTGCGTTCCGTCTTAAGATGGGCCATAGAGTGAAGAGTATAAGAGAGAGATTAGACAAAATTGCAGCTGATAAGTCTAAATTTAATCTCACCGAGGGAATTGCAAACACCCGCGTAGTACAGAGGGAGAGGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATGTCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAGGCAATCCAAACTAAGAGGCCTTTCCCTTGAGGATTGTTTGTCTTTATTTGTGAAATGTGCATTTAAGGACGGAGAAGATGAACAACATCCAAACCTTTTAAAAATTGGGGAACAGATTATTGAGAAATGTGCAGGGGTTCCTCTTGCTGTGAGAAGTTTAGGGAGTTTACTGCATTTGAAAAGGGATGAACGGGATTGGGTATCCATTAAAGAGAGCGAAATTTGGAAATTAGAACAAGATGAAAATAGGATTATGGCTGCATTAAAGCTGAGCTATTATGATTTGCCTCATCACTTCAGACAATGTTTTGCCCTTTGTTCGATATTTCCCAAAGATTTTGAATTTGATAATCGTCTTCTGATCTCAATTTGGATGGCGCAAGGCCTCATTCAATCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAACTATATTAATGAACTATTGTCGAGATCTTTGTTTCAAGATGTTAAGCAAAACGTACCAGGAGTAATATATGCCTTTAAAATGCATGATCTTGTACATGATCTTGCGATATTTTTTGCACAACCTGAGTATGTAACACTAAATTTTCACAGTAAAGACATTTCTAAAAGGGTTCAACATGTTGCATTTTCTGACAATGATTGGCCAAAAGAAGAGTTTGAAGCTTTAAGATTCTTGGAGAAGCTAAACAATGTCCGTACCATTGATTTTCAAATGGACAATGTTGCTCCTAGAAGCAACTCATTTGTTATGGCATGTGTCTTGAGATTCAAATGTATGCGGGTATTGGATTTAACTGAATCCAGCTTTGAAGTGTTGCCTGATTCAATTGATAGTCTGAAGCATCTAAGATTCTTGAACCTATCTAAGAATGAGAGAATCAAGAAACTCCCTAATTCCATTTGCAAGTTGTACCATTTGCAAACTTTGATGCTAGGTGAATGTTCAGAACTTGAAGAATTCCCAAGAGGCATAGGGAGTATGATTACCTTATTGCACTTCGAATATTAA 1503 39.79 MQRETHSFVRASDVIGRDDDKENIVGLLRQSSDTENEKQATNRQISDWLGKLKLVLYDAEDVLDEFDYEALRQQVVASGSSITSKVRSFISSSKSLAFRLKMGHRVKSIRERLDKIAADKSKFNLTEGIANTRVVQRERQRETHSFVRASDVIGRDDDKENIVGLLRQSKLRGLSLEDCLSLFVKCAFKDGEDEQHPNLLKIGEQIIEKCAGVPLAVRSLGSLLHLKRDERDWVSIKESEIWKLEQDENRIMAALKLSYYDLPHHFRQCFALCSIFPKDFEFDNRLLISIWMAQGLIQSSGQNAKMEDIGENYINELLSRSLFQDVKQNVPGVIYAFKMHDLVHDLAIFFAQPEYVTLNFHSKDISKRVQHVAFSDNDWPKEEFEALRFLEKLNNVRTIDFQMDNVAPRSNSFVMACVLRFKCMRVLDLTESSFEVLPDSIDSLKHLRFLNLSKNERIKKLPNSICKLYHLQTLMLGECSELEEFPRGIGSMITLLHFEY* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2893560 2898013 + Vvi17g265 Vvi17g265 778962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g265 500 Gene3D - 173 257 IPR042197 -
Vvi17g265 500 Pfam NB-ARC domain 169 259 IPR002182 GO:0043531
Vvi17g265 500 PANTHER DISEASE RESISTANCE PROTEIN RP 42 160 IPR044974 GO:0006952
Vvi17g265 500 PANTHER DISEASE RESISTANCE PROTEIN RP 167 495 IPR044974 GO:0006952
Vvi17g265 500 Gene3D - 19 107 - -
Vvi17g265 500 Gene3D - 258 348 IPR036388 -
Vvi17g265 500 SUPERFAMILY L domain-like 338 498 - -
Vvi17g265 500 Pfam Rx N-terminal domain 36 84 IPR041118 -
Vvi17g265 500 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 42 160 - -
Vvi17g265 500 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 167 495 - -
Vvi17g265 500 Gene3D Ribonuclease Inhibitor 355 499 IPR032675 -
Vvi17g265 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 273 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g265 - - - vvi:100242377 712.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313