Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g266 ATGATAAGCCACAGACAAGATTGGACTTTAAGTATTCAAACATTTGACCAAAGGAGCCAAACCCCTCTTCTACTCAAAATGTGCCATGTTCAAGAAAAGAATGTGGGAATATTTTGGTTGCTCACTTGTCAAGCACTGAATCCAATTCTAACCATGTTCATGGGTTTCTCACTTTCCTTGTGTCTCTGCAACATGGCTGAATCCTTTGCTTTTGCCATAGCTGACAGAGTTTTGGGGAAGTTGGGCTCTGCCCTCATCCAAGAAGTTGGCCTTGCTTGGGGTGTTAAAACCGAGCTGGAAGAGCTCAACGATACTCTATCCACCATCCGAGCGGTGCTCTTAGATGCAGAGGAGAAGCAAGCCACCAGCCATCAGCTGAGAGATTGGCTGGGAAAGCTCAAAGATGGCTTTTATGATGCTGAAGATATTGTCGATGAATTTGAATATGAGGCCTTACGCCAGAAAGTGAATGTTTCTGTAATTCCCATAGTCGGGATTGGGGGGCTAGGCAAGACAACTCTGGCTGGACTTGTGTATAATGATGAGAGAGTAGTGGGGCAATTCTCCACTAAAATGTGGGTTTGTGTGTCAGATGAGTTTGATATTGAAAAGCTGGTAAAGAAAATCCTTAAGGAGATCAGGAAAGGTGATGAAAGTTACAGTGACTCCTCCATGGTGCAGTTGCAGAAAATAAAGGGTCTTTGTCATGACGATTGTTTGTCTTTATTTGTGAAATGCTCATTTAGGGACGGAGAAGATGAGTATCCAAACCTTTTAAAAATTGGGGATCAGATTGTTGAGAAATGTGCAGGGGTTCCCCTTGCTGTGAGAAGTTTAGGGAGTTTACTGTATTCGAAAAGGGATGAATGGGATTGGGTATCCATTAGAGATAGCGAAATATGGGAATTAGAACAAAATGAAGATGGTATTATGGCTGCATTAAGACTGAGCTATTATGATTTGCCTTATCACTTGAAGCAATGCTTTGCTCTTTGTTCAGTATTTGCCAAAGATTTTGAATTTAGTAATGTTGAATTGATCTCAACTTGGATGGCAGAAGGCCTCATTCATTCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAGATATATTAATGAGCTATTATCGAGATCTTTCTTTCAAGATGTTGAGCAACGGATACCAGGAGTATTATATACATTCAAAATGCATGATCTTGTACATGATCTTGCGATGTTTTTTGCACAACCTGAGTGTTTAACACTAAATTTTCACAAGAAAGATATTCCTAAAAGGGTTCAACACGCCGCATTTTCTGATACCGACGAATCATTTGTTAAGGCATGCATCTTGAGATTCAAATGTATACGGAGATTGGATTTACAAGACTCTAACTTTGAAGCATTGCCTAATTCTATTGGTAGTCTGAAGCATCTAAGATACTTGAACCTAAGTGGGAATAAGAGAATCAAGAAACTCCCTAATTCCATTTGCAAGCTATACCATTTGCAATTTTTGACACTCTTTGGTTGTTCAGAACTTGAAGAATTACCAAGAGGCATATGGAGTATGATCAGTTTGAGGACGGTATCTATAACAATGAAACAAAGGGATTTATTTGGAAAGGAAAAAGGGTTGAGAAGCTTGAATTCTCTTCAACATTTACAAATTGTTGATTGTCTCAATTTGGAATTTTTGTCTAAAGGAATGGAAAGCCTTATTCAACTTCGAATATTAGTCATTAGCGATTGTCCAAGTTTGGTTTCTTTGTCACATAATATAAAATTCTTGACTGCATTAGAGGTGTTGGTAATTGACAATTGTCAAAAACTTGAATCCATGGATGGGGAAGCAGAAGGGCAAGAAGACATTCAAAGCTTTGGGAGCCTACAAATTTTGTTCTTTGGTGATTTACCACAATTGGAGGCTTTACCGAGGTGGCTTCTTCATGGGCCAACTTCTAACACTTTACATCAATTACATATTTCAAATTGCCCAAGCTTGAGAGCATTGCCAGAAAGTGGGTTGCAAAAGCTCGTATACCTTCAAAAACTTGAGATTGAAGATTGTCCTGAATTGATTGGAAGATGCAAAACTGAAACGGGGGAAGATTGGCAAAAAATCGCTCATATACCTAAAATATATCTTGATGGAGAAAAGATTGCATCATTTAGTGTAAATACACTAAAATATCAAAAGTATTAA 2190 38.58 MISHRQDWTLSIQTFDQRSQTPLLLKMCHVQEKNVGIFWLLTCQALNPILTMFMGFSLSLCLCNMAESFAFAIADRVLGKLGSALIQEVGLAWGVKTELEELNDTLSTIRAVLLDAEEKQATSHQLRDWLGKLKDGFYDAEDIVDEFEYEALRQKVNVSVIPIVGIGGLGKTTLAGLVYNDERVVGQFSTKMWVCVSDEFDIEKLVKKILKEIRKGDESYSDSSMVQLQKIKGLCHDDCLSLFVKCSFRDGEDEYPNLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWELEQNEDGIMAALRLSYYDLPYHLKQCFALCSVFAKDFEFSNVELISTWMAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQRIPGVLYTFKMHDLVHDLAMFFAQPECLTLNFHKKDIPKRVQHAAFSDTDESFVKACILRFKCIRRLDLQDSNFEALPNSIGSLKHLRYLNLSGNKRIKKLPNSICKLYHLQFLTLFGCSELEELPRGIWSMISLRTVSITMKQRDLFGKEKGLRSLNSLQHLQIVDCLNLEFLSKGMESLIQLRILVISDCPSLVSLSHNIKFLTALEVLVIDNCQKLESMDGEAEGQEDIQSFGSLQILFFGDLPQLEALPRWLLHGPTSNTLHQLHISNCPSLRALPESGLQKLVYLQKLEIEDCPELIGRCKTETGEDWQKIAHIPKIYLDGEKIASFSVNTLKYQKY* 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2900281 2907002 + Vvi17g266 Vvi17g266 778963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g266 729 Pfam NB-ARC domain 152 221 IPR002182 GO:0043531
Vvi17g266 729 Pfam NB-ARC domain 229 318 IPR002182 GO:0043531
Vvi17g266 729 Pfam Leucine rich repeat 452 506 IPR001611 GO:0005515
Vvi17g266 729 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 70 663 - -
Vvi17g266 729 PRINTS Disease resistance protein signature 160 175 - -
Vvi17g266 729 PRINTS Disease resistance protein signature 469 485 - -
Vvi17g266 729 Gene3D - 317 407 IPR036388 -
Vvi17g266 729 CDD RX-CC_like 70 155 IPR038005 -
Vvi17g266 729 Coils Coil 99 119 - -
Vvi17g266 729 Gene3D Ribonuclease Inhibitor 410 727 IPR032675 -
Vvi17g266 729 ProSiteProfiles Leucine-rich repeat profile. 473 495 IPR001611 GO:0005515
Vvi17g266 729 Gene3D - 75 163 - -
Vvi17g266 729 SUPERFAMILY L domain-like 383 704 - -
Vvi17g266 729 Pfam Rx N-terminal domain 76 156 IPR041118 -
Vvi17g266 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 332 IPR027417 -
Vvi17g266 729 PANTHER DISEASE RESISTANCE PROTEIN RP 70 663 IPR044974 GO:0006952
Vvi17g266 729 Gene3D - 234 316 IPR042197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g266 - - - vvi:100245709 734.176
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313