Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g267 ATGGTTGAATCATTTGCCTTTGCCATAGCTGACAGAGTTTTGGGGAAGTTGGGCTCTGCCCTCATCCAAGAAGTTGGCCTTGCCTGGGGTGTTAAAACCGAGCTGGAAGAGCTCAACGATACTTTATCCACCATCCGAGCGGTGCTCTTAGATGCTGAGGAGAAGCAAGCCACCAGCCATCAGCTGAGAGATTGGCTGGGAAAGCTCAAAGTTGGCTTTTATGATGCTGAAGATATTGTCGATGAATTTGAATATGAGGCCTTACGCCAGAAAGTGGTGGCTAGTGGGAGTTTTAAAACCAAGCAAGAGGGAGATGACCCACTCCTTTGTCCGAGCTTCCGATGTGATGAAAGTTACAGTGACTCCTCCATGGAGCAGTTGCAGAGTCATCTTAGAAATGCATTAGATGGTGAAAAATTCTTGCTGGTTTTGGATGATGTGTGGAATACGGATCGTGAGAAGTGGCTTAAGCTGAAAGACTTGCTCGTGGACGGTGCCAGTGGAAGCAAAATTCTTGTAACTACACGCAAGAAGTCAACTGCTTCAATCATGGGCACTTTTCCCATGCAAGAAATAAAGGGTCTTTCTCATGACGATTGTTTATCTTTATTTGTGAAATGCGCATTTAGGGACGGAGAAGATAAACAATATCCAACCCTTTTAAAAATTGGGGACCAAATTGTTGAGAAATGTGCAGGGGTTCCTCTGGCTGTGAGAAGTTTAGGGAGTTTGCTACTGAGCTATTATGATTTGCCTTATCACTTGAAACAATGCTTTGCTCTTTGTTCCCTATTTCCCAAAGATTATGAATTTAGTAATGTTGTTTTGATCTCAACTTGGATGGCAGAAGGCCTCATTCATTCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAGATATATTAATGAGCTATTATCGAGATCTTTCTTTCAAGATGTTGAGCAGCTGATACTAGGAGTACTATATACATTCAAAATGCACGATCTTGTACATGATCTTGCGATGTTTTTTGCACAACCTGAGTGTTTAATACTAAATTTTCATAGTAAAGATATTCCTAAAAGGGTTCAACACGCCGCATTTTCTGATACCGAGTGGCCCAAAGAAGAGTGTAAAGCTTTAAAATTCTTGGAGAAAAGCGAATCATTTGTTAAGGCATGCATCTTGAGATTCAAATGTATACGGATATTGGATTTACAAGACTCTAACTTTGAAGCATTGCCTAAATCTATTGGTAGTATGAAGCATCTAAGATTTTTGGACTTAAGTGGAAATAAGAGAATCAAAAAACTCCCTAATTCCATTTGTAACTTGAATTCTCTTCAACGATTAGAGATTTTTGGTTTCTTTGTCACATGGTATAAAACTCTTGACTGCATTAGAGCCAACTTCTAA 1401 40.11 MVESFAFAIADRVLGKLGSALIQEVGLAWGVKTELEELNDTLSTIRAVLLDAEEKQATSHQLRDWLGKLKVGFYDAEDIVDEFEYEALRQKVVASGSFKTKQEGDDPLLCPSFRCDESYSDSSMEQLQSHLRNALDGEKFLLVLDDVWNTDREKWLKLKDLLVDGASGSKILVTTRKKSTASIMGTFPMQEIKGLSHDDCLSLFVKCAFRDGEDKQYPTLLKIGDQIVEKCAGVPLAVRSLGSLLLSYYDLPYHLKQCFALCSLFPKDYEFSNVVLISTWMAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQLILGVLYTFKMHDLVHDLAMFFAQPECLILNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKSESFVKACILRFKCIRILDLQDSNFEALPKSIGSMKHLRFLDLSGNKRIKKLPNSICNLNSLQRLEIFGFFVTWYKTLDCIRANF* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2907491 2909885 + Vvi17g267 Vvi17g267 778964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g267 466 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Vvi17g267 466 Gene3D - 256 337 IPR036388 -
Vvi17g267 466 CDD RX-CC_like 6 91 IPR038005 -
Vvi17g267 466 Gene3D Ribonuclease Inhibitor 363 460 IPR032675 -
Vvi17g267 466 Pfam NB-ARC domain 120 247 IPR002182 GO:0043531
Vvi17g267 466 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 444 - -
Vvi17g267 466 Pfam Leucine rich repeat 397 449 IPR001611 GO:0005515
Vvi17g267 466 PRINTS Disease resistance protein signature 134 148 - -
Vvi17g267 466 PRINTS Disease resistance protein signature 231 245 - -
Vvi17g267 466 PRINTS Disease resistance protein signature 414 430 - -
Vvi17g267 466 Gene3D - 194 255 IPR042197 -
Vvi17g267 466 PANTHER DISEASE RESISTANCE PROTEIN RP 6 444 IPR044974 GO:0006952
Vvi17g267 466 Coils Coil 35 55 - -
Vvi17g267 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 262 IPR027417 -
Vvi17g267 466 Pfam Rx N-terminal domain 12 98 IPR041118 -
Vvi17g267 466 Gene3D - 11 103 - -
Vvi17g267 466 SUPERFAMILY L domain-like 327 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g267 - - - vvi:100242377 509.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313