Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g268 ATGGCTGATGAACCCAGATCGACCTCATTGAATGAGAACACAAATGTTGTACCTGATAGTTGCAAGCGGGGAGGTGATTTTGAGGACGCGGACTCCGTATTGGTTGTCAAGAAGTTAAAAACTGAGGCATTGAGTGTGGAAAATGCGAGGGAAGTAGGGAAAAGGCATTTAGATGTGGCAAGTTGTCAAGAATACTGCAAACCAGAAGTTTCTAATCAAGGAAACAATGACAGTCAGGTGTGTGAGCAGAATGGTTGTTCGCAGGAGAAGCAAAGTGCGAGGAAAGAGCATTTTGAGATTGAAGCGGATGCTGCAGAAGATAAGGGTTCTAGGCACAGCATGGAGGATGCATGGGTTGTGCTTCCTGATGCAAGCTTGGAATTTCCAGGGAAATTGAGATGCGCACATTTTGCAATCTATGATGGACATGGTGGTAGGTTAGCTGCTCAGTATGCCCAGAAGCATTTACATGCAAATGTTCTTTCGGCAGGCTTACCACGTGAGTTGTTGGATGTTAAAGCTGCCAAAAAGGCCATACTAGATGGTTTTCGAAGAACTGATGAGAGTCTTCTTCAAGAAAGTTTGGCAGGGGGATGGCAGGATGGTTCAACAGCTGTATGTGTTTGGATATTAGGACAAAAGGTTTTTGTTGCCAACATTGGAGATGCAAAAGCAGTTGTAGCACGATCATCTACCACCGATGGATCAGAGAATCAGTCAGATGGAGTAAGTCAATTAAAGGCCATTGTTTTGACAAGGGAACACAAAGCCATTTATCCACAAGAACGTGCTCGCATTCAGAAGGCTGGTGGGTCTGTGAGTTCAAATGGACGATTGCAGGGACGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGGTGGGCGTTGTTGCTACTCCAGATGTTCATTCCTTTGACCTCACAGAAAGAGAACACTTCATTATTCTTGGCTGTGATGGCCTGTGGGGGGTTTTTGGACCTAGTGATGCTGTTGATTTTGTTCATAAAATGTTGAAGGAGGGCCTACCTGTTGCAACTGTGAGTCGCCGTCTTGTAAGGGAAGCTGTCCGTGAGCGGCGCTGCAAGGATAACTGTACTGCAATTGTCATTGTTTTCAGGCCCAAGTAG 1137 45.65 MADEPRSTSLNENTNVVPDSCKRGGDFEDADSVLVVKKLKTEALSVENAREVGKRHLDVASCQEYCKPEVSNQGNNDSQVCEQNGCSQEKQSARKEHFEIEADAAEDKGSRHSMEDAWVVLPDASLEFPGKLRCAHFAIYDGHGGRLAAQYAQKHLHANVLSAGLPRELLDVKAAKKAILDGFRRTDESLLQESLAGGWQDGSTAVCVWILGQKVFVANIGDAKAVVARSSTTDGSENQSDGVSQLKAIVLTREHKAIYPQERARIQKAGGSVSSNGRLQGRLEVSRAFGDRQFKKVGVVATPDVHSFDLTEREHFIILGCDGLWGVFGPSDAVDFVHKMLKEGLPVATVSRRLVREAVRERRCKDNCTAIVIVFRPK* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2913009 2945668 + Vvi17g268 Vvi17g268 778965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g268 378 SUPERFAMILY PP2C-like 95 376 IPR036457 -
Vvi17g268 378 PANTHER PROTEIN PHOSPHATASE 2C 47 372 IPR015655 GO:0004722|GO:0006470
Vvi17g268 378 SMART PP2C_4 97 373 IPR001932 -
Vvi17g268 378 Coils Coil 88 108 - -
Vvi17g268 378 MobiDBLite consensus disorder prediction 1 27 - -
Vvi17g268 378 ProSiteProfiles PPM-type phosphatase domain profile. 101 375 IPR001932 -
Vvi17g268 378 Gene3D - 83 376 IPR036457 -
Vvi17g268 378 Pfam Protein phosphatase 2C 105 363 IPR001932 -
Vvi17g268 378 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 47 372 - -
Vvi17g268 378 MobiDBLite consensus disorder prediction 1 18 - -
Vvi17g268 378 CDD PP2Cc 105 375 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g268 K17500 - vvi:100257757 753.051