Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g27 ATGGCGTCGTCGGAGGTCTCGATAAAGGGGAATTGCGGGCACGGAAGGGGAGAGAGCTTCACGTCGGGGTACAGCGAGCCTAACGATGGTGGAGTGTCGAGGAGCGTTGCGGAAGGGCAGAAAGGTCATTCCAGTGTTTCCGGTGCCGGAAAAGATTTTGAAACCGCGCTTTATACGGAGCTATGGCATGCTTGTGCCGGCCCTCTGGTGACTGTGCCTCGTGAGCGAGAGCGAGTTTTCTATTTCCCTCAGGGGCACATCGAGCAGGTTGAGGCATCGACCAATCAGGTGTCGGACCAGCAGATGCCAGTTTATGATCTTCCATCCAAGATCCTTTGTCGGGTGATCAACGTCCAATTGAAGGCTGAACCAGACACTGATGAGGTGTTTGCGCAAGTTACTTTGCTTCCTGAGCCAAACCAAGACGAGACCGCACAAGAGAAGGAACCTCTGCCACCGCCTCCACCGAGGTTCCATGTGCATTCATTCTGCAAGACCTTGACAGCCTCTGATACAAGCACCCATGGAGGATTTTCAGTGCTGAGGCGCCATGCAGATGAATGCCTTCCACAACTGGACATGTCCCGGCAGCCTCCAACACAGGAGTTGGTTGCCAAGGATTTGCATGGAAATGAGTGGCGTTTCCGGCATATCTTTAGGGGTCAACCTCGGAGGCACTTACTTCAAAGTGGTTGGAGCGTCTTTGTTAGCTCCAAAAGGCTTGTTGCCGGGGATGCCTTTATATTTCTCAGGGGTGAGAATGGAGAACTTCGTGTTGGAGTGAGGCGTGCTATGAGGCAACAGGGCAATGTTCCATCATCGGTTATATCTAGTCACAGCATGCATCTTGGTGTCCTTGCAACAGCATGGCATGCCAAATCAACTGGAACCATGTTCACTGTTTATTACAAACCTAGGACAAGCCCTGCAGAGTTTATTGTTCCCTTTGATCAATACATGGAATCCGTCAAGAACAATTATTCAATAGGGATGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCAGAGCAGAGGTTTACGGGCACCATAGTTGGGATTGAAGATGCTGATCCCAAAAGGTGGCGAGATTCGAAGTGGAGATGTCTAAAGGTGAGATGGGATGAAACTTCTACTATCCCACGTCCAGATAGAGTTTCCCCCTGGAAAATAGAACCCGCTGTGACTCCACCTGCATTGAATCCCCTTCCAGTGCCCAGACCAAAAAGACCCCGATCAAACATGGTGCCTTCATCTCCTGATTCATCTGTCCTCACAAGGGAAGGTTCATCTAAAGTAACTGTAGACCCTTCACCAGCAAGTGGCTTTTCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCACTTTTGCTGAGAGTAATGAATCAGACACTGCTGAAAAGTCTGTTGTGTGGCCTCCTTTGCTAGATGATGAAAAGATTGATGTGGTTTCCACATCCCGAAGATTTGGATCAGACAACTGGATGCATTTAGTGAGACATGAACCAACTTGCACGGATCTACTATCTGGGTTTGGGGCTCGGACTGATTCCTCACATGGGTTCTCTTCATTTGTTGATCAAAATGATGTTGCTGCCAACACGATGAAAAAACATCTAGAACATGAAAGCAAGTTTAACTTGCTGGCAGGCCCATGGTCCATGATGCCTTCTGGCCTCTCTCTTAATTTGCTGGAGTCTAGCATTAAGGTACCTGTACAAGGCAGTGACATGCCTTACCAAACACGGGGGGATGCTAGGTTTGGTGGGTTCAGTGAGTATCCCACACTACATGGTCATAGAGTTGAGCTACAGCAAGGAAACTGGTTGATGCCTCCACCGGCTCAATCACATTTTGAGAATTTTGCTCATTCAAGAGAGCTAATGCCGAAACCTATTTTGGTTCAGAAGCAAGAGGCTGTGAAACCCAAGGATGGAAACTGCAAGCTCTTTGGCATTCCTCTAATTGGTAATCCTGTTATATCAGAACCAGCAATGTCATACAGAAGCATGACAAATGAGCCAGCAGGTCATTTACATCTTGCGCCTAGTGCATTTGATTCTGATCAAAAGTCTGAACAGTCAAAAGGTGCTAAATCAACCGATAATCCTCTGGCTGTTAGTGAGCAGGAGAAACCATGCCAAACTTCTCTCCCTCTTTCAAGAGATGTTCAGGGAAAAGTTCAGAGTGTTTCAACAAGGAGTTGCACCAAGGTTCACAAGCAGGGAATTGCTCTTGGTAGATCTGTGGACCTTACTAAATTCAACAACTATGATGAATTGATTGCTGAATTGGATCAGTTGTTCGAATTCGGGGGCGAGTTAATGGCTCCCAAGAAGAATTGGCTGATTGTGTATACTGATGATGAGGGTGATATGATGCTTGTTGGAGATGATCCATGGCAGGAATTTTGTGGCATGGTTCGGAAGATCTACATTTACACCAGAGAGGAGGTGCAAAGGATGAATCCAGGGACCTTAAATTCAAAGAATGACGATAATCCATCAGTTGCAGAAGGCATGGATGCAAAAGAAGTGAAACGTCAGCCGGTTCCTTTGACATCAAACCTAGAGAATTGCTAG 2589 47.2 MASSEVSIKGNCGHGRGESFTSGYSEPNDGGVSRSVAEGQKGHSSVSGAGKDFETALYTELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVSDQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDETAQEKEPLPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPQLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAKSTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWRDSKWRCLKVRWDETSTIPRPDRVSPWKIEPAVTPPALNPLPVPRPKRPRSNMVPSSPDSSVLTREGSSKVTVDPSPASGFSRVLQGQEFSTLRGTFAESNESDTAEKSVVWPPLLDDEKIDVVSTSRRFGSDNWMHLVRHEPTCTDLLSGFGARTDSSHGFSSFVDQNDVAANTMKKHLEHESKFNLLAGPWSMMPSGLSLNLLESSIKVPVQGSDMPYQTRGDARFGGFSEYPTLHGHRVELQQGNWLMPPPAQSHFENFAHSRELMPKPILVQKQEAVKPKDGNCKLFGIPLIGNPVISEPAMSYRSMTNEPAGHLHLAPSAFDSDQKSEQSKGAKSTDNPLAVSEQEKPCQTSLPLSRDVQGKVQSVSTRSCTKVHKQGIALGRSVDLTKFNNYDELIAELDQLFEFGGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIYIYTREEVQRMNPGTLNSKNDDNPSVAEGMDAKEVKRQPVPLTSNLENC* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 224845 230250 + Vvi17g27 Vvi17g27 778724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g27 862 MobiDBLite consensus disorder prediction 415 444 - -
Vvi17g27 862 ProSiteProfiles B3 DNA-binding domain profile. 163 265 IPR003340 GO:0003677
Vvi17g27 862 Gene3D - 326 397 - -
Vvi17g27 862 Gene3D - 731 825 - -
Vvi17g27 862 SUPERFAMILY CAD & PB1 domains 735 813 - -
Vvi17g27 862 Pfam Auxin response factor 289 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi17g27 862 MobiDBLite consensus disorder prediction 678 723 - -
Vvi17g27 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 843 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi17g27 862 PANTHER AUXIN RESPONSE FACTOR 2 43 843 - -
Vvi17g27 862 MobiDBLite consensus disorder prediction 825 862 - -
Vvi17g27 862 MobiDBLite consensus disorder prediction 689 723 - -
Vvi17g27 862 Pfam B3 DNA binding domain 163 264 IPR003340 GO:0003677
Vvi17g27 862 MobiDBLite consensus disorder prediction 395 413 - -
Vvi17g27 862 SMART B3_2 163 265 IPR003340 GO:0003677
Vvi17g27 862 CDD B3_DNA 161 263 IPR003340 GO:0003677
Vvi17g27 862 Gene3D - 160 265 IPR015300 -
Vvi17g27 862 SUPERFAMILY DNA-binding pseudobarrel domain 159 292 IPR015300 -
Vvi17g27 862 MobiDBLite consensus disorder prediction 1 49 - -
Vvi17g27 862 Pfam AUX/IAA family 727 821 IPR033389 -
Vvi17g27 862 MobiDBLite consensus disorder prediction 382 444 - -
Vvi17g27 862 ProSiteProfiles PB1 domain profile. 736 818 IPR000270 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14184 PF02309 AUX_IAA 2.90E-11 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g27 - - vvi:100268072 1737.62