Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g275 ATGGATCCATCACCACCGCCTCTTCCTCCCCATCCCATCACCACTATGCAGCTCAACTATCCCGAATCCGCAGACTCTTCTCCCAGGAAGGCGGATACCTGGGAAGAGCCTCTCCCGCCGGTCCCAGGTGCCAGACTCCGTCTTATGTGCAGCTTCGGCGGCCACATTATCCCCCGCCCACATGACAAGACTCTCTGCTATATGGGCGGTGAGACCCGCATGATCGTGGTCGACCGCAGCTCTTCCTTGGCTGACCTTTCCTCTCGCATCTCCCGGACTCTACTCAATGGCCGCGGTTTTACCCTCAAGTACCAACTCCCCAATGAGGACCTGGACAATCTCATTTCAGTCACGACCAATGAAGATCTTGATAACATGATAGAAGAGTATGATAGAATCACGTCAGCTTCCCCTTTGAAATCCTCTCGCCTCCGGCTATTTATCTTCCTTGCGAAGCCTGAAACTGCCGCTTCTATGGGGTCTCTACTTGATGATGCCAAGTCTGAGACTTGGTTTGTTGATGCACTCAATGGCGCTGGGCTGCTTCCCAGAGGACTTTCTGATTCTGCGGCCATTGATTGCTTTCTTGATAGAGATGCTAGTGGCGATTCTTGTACACATGTGGAGGCGCAAACCGACTCTTTATGCAACACCAAGCATGGGAAGAGTGGGCAGGAGGTGCACTCGGTGCCTAGCTCACCTATGGTAGAGACTGCTTCGTCCTTTGGCTCATCTTCATCTTCGCCCTCCATGGCCAACCTGCCGCCTATTCGGGTGCGGGCTGAGGACGGTGGGCTTAGACTGCATGATCACAAGGTTGGTTTGGAGGAGGAGTTTGCATATATGAGTACTAATCCTCAGACTGTGGTGCAGAAACAAGATGAGGGGTTTGTTGTGTTGTCTGCTCCGCCCCCACTTCCCAGTTCTGCTATTGTTGGTGGAACTGCGGCTGCAGCTGCTGCAGAATCTGGTGAGAACCAGAGCCGAGGTTTCTCCGATGATGAGAGATCCGATCAAGGGGTGAGGATTCGCTTCAGAAAACCTCCATTGCCACTGCAGCCAGTGCAACGAAGGCTCGATGATGGTTTCAATTTGCCTTCCCCAGATTCGAAACATGCCTATCTAGACCCGGTTCATGTCACAACCAAAGACAACAAGCCTCCTATTCCAATTGATCCGAAGAAGGATACTCCAGACATGAGCTCTCAAATCCAGCTGCAACAAGTTCAGGATTCCAGCTACATATTGCCTTCACAAGCCGCGGATCTGCAGCAGCAGCAACCAGTAGTCCACGCCAGCATGCATTACATCCACCACCCACCAACAGGTTCTGCAGTGCCAATCTCATCATACTACCCAATGTATGCTCCAACACCACAAAATCAGCAGCAGCTTCATCACCAGATGGATCAGCAATATCCTGTCTACTTGTTGCCCATCACACAGCCACAAACTTACAACTTGCCATTGCAGTCCAATGTTGCAACTGACTCTACTGCTGTAGCACCCGGCCGGGCACTCACACCTCCGACTCCGGCCATGGTCACACCTTCCGGGCTTTACAAAGAAATAAGTACTCCACCAATCTACCCCACGAAACCAGAAATGGCTGCAAGTGTGTATAGAACAGTTGGCACTGCAACTCCACCTCTCGTCCAAGTTCCTTCCAATCAATTTCATCAGCAACAACAGTATGTGGGGTTCAGTCAGTTGCATCACCCACCACAGTCCATTGCTGCTGCCGCTCCTAATTATGCCTTTGAATACGCCCATCCTGCACAAGACCAGGCATACTACACTCACCATTCAGTTGCTCCATTGCCTCCCCAGTACCAAACGTTGACCTCAACCGCAGCAGTGGCATTATCCGAAGCCTCAGCACATTATTCCAAATGTATGGTAATTTTTGCCAAGTAG 1917 51.38 MDPSPPPLPPHPITTMQLNYPESADSSPRKADTWEEPLPPVPGARLRLMCSFGGHIIPRPHDKTLCYMGGETRMIVVDRSSSLADLSSRISRTLLNGRGFTLKYQLPNEDLDNLISVTTNEDLDNMIEEYDRITSASPLKSSRLRLFIFLAKPETAASMGSLLDDAKSETWFVDALNGAGLLPRGLSDSAAIDCFLDRDASGDSCTHVEAQTDSLCNTKHGKSGQEVHSVPSSPMVETASSFGSSSSSPSMANLPPIRVRAEDGGLRLHDHKVGLEEEFAYMSTNPQTVVQKQDEGFVVLSAPPPLPSSAIVGGTAAAAAAESGENQSRGFSDDERSDQGVRIRFRKPPLPLQPVQRRLDDGFNLPSPDSKHAYLDPVHVTTKDNKPPIPIDPKKDTPDMSSQIQLQQVQDSSYILPSQAADLQQQQPVVHASMHYIHHPPTGSAVPISSYYPMYAPTPQNQQQLHHQMDQQYPVYLLPITQPQTYNLPLQSNVATDSTAVAPGRALTPPTPAMVTPSGLYKEISTPPIYPTKPEMAASVYRTVGTATPPLVQVPSNQFHQQQQYVGFSQLHHPPQSIAAAAPNYAFEYAHPAQDQAYYTHHSVAPLPPQYQTLTSTAAVALSEASAHYSKCMVIFAK* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3071406 3074093 + Vvi17g275 Vvi17g275 778972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g275 638 PANTHER OS05G0427100 PROTEIN-RELATED 1 630 - -
Vvi17g275 638 CDD PB1_UP2 49 149 - -
Vvi17g275 638 Gene3D - 63 150 - -
Vvi17g275 638 MobiDBLite consensus disorder prediction 217 255 - -
Vvi17g275 638 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 630 - -
Vvi17g275 638 MobiDBLite consensus disorder prediction 1 38 - -
Vvi17g275 638 MobiDBLite consensus disorder prediction 317 401 - -
Vvi17g275 638 Pfam PB1 domain 63 149 IPR000270 GO:0005515
Vvi17g275 638 MobiDBLite consensus disorder prediction 217 253 - -
Vvi17g275 638 MobiDBLite consensus disorder prediction 328 343 - -
Vvi17g275 638 SMART PB1_new 60 151 IPR000270 GO:0005515
Vvi17g275 638 SUPERFAMILY CAD & PB1 domains 61 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g275 - - - vvi:100264517 1182.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g846 Vvi17g275 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g275 . . . . . . . . . . Cma10g00310 . Car10g00295 Car11g00266 . . Cpe04g01389 . . . . . . . Cla06g01447 Cam06g1600 Cec06g1662 Cco06g1656 Clacu06g1565 Cmu06g1518 Cre06g2329 . Cone16ag0553 Cone13ag0315 . . . . . . . . . . . . . . Cmo10g00335 Cmo11g00297 . . . . . . . . . . . . . . . . . . . . Lsi06g01313 Csa01g00403 Chy02g02346 Cme02g01723
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009839 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33