Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g277 ATGGGAGCAAGAAAAAGAACAACGAAAATGGCGCTTCGGCATTCGGAACCTGTATGCTTCTCCCATTTCTGCCCGGCCCGGTTCCGGTCCAGACGACAACTTCGAGTCTCGAGGGCCGGCTCGTCGGTCCCGAGGTTGAGGCCGCCGGCGGTATTGGTGGCGGCGGCGAGGGAAGCGCATGTGAACAAGCCTTCTGTTTGTACTGCGGATGAGCTTCACCGCGTGGCTGTCACCGACTCCGACTGGAGCCTCGCTCTGTGGCGGTACACACCTTCTCCGAAGGCGGAGCGGAGGAATCACCCGCTGTTGCTGTTGTCTGGCATTGGAACCAATGCTATTGGATTTGATCTTGCTCCTGAGTCTTCTTTTGCACGTTACTTGTCCAACCAAGGATTTGATACATGGATTCTTGAACTTCGAGGTGCTGGGTTGAGCACATTAGTAGGGGAATCCAGGGAAGTTAAGAAGCCTTTCAAGGCTATGTCTGATCGGGTAGGAACAAATGGTGTTCTTCCTGCAGAAGCACCATCAACCGTAATTTCTGGCACTCTTGTGGAAACTTTTATCCCTTCTGTCAAAGGAAAAAGAATGGTGGTTGAATCTGATGACGCACAATCGGTGTCAAAGTTGTCAGAAACTTCTACTCACTTATTTCAAAAGCTCTCTAGGTTTCTAAATGAAGGTGTATTTGAAGAAAGGCAAAACTTCTCTATTGCTAGTCAGATCAGGGATTTGAGTGGAAGGCATGTAAACATTATTAAAGAAGGTCAATGGACGATTTCACCACCCTTGTTTGACTTGAAGGAGGTTTTTTTAACACTACTCGATGATTTCCAAAAGCAACTTGACCTGATTTTAAAGTACAACTGGGACTTTGATCACCATATGAAAGAGGATGTGCCTGCAGCGATGGAGTATATAAGGACTCTATGCAAACCAAAGGATGGCAAGTTGCTTGCAATTGGTCACTCCATGGGGGGTATATTGCTGTATGCAATGCTTTCACAATCTGGTTCTGAAGGAAGGGATTCTGGGCTGGCATCAGTCATTACATTGGCATCATCACTTGACTTCACATCTTCAAAATCATCACTGAAATTGCTCTTACCCCTGGCTGATCCTGCACAAGCTCTAAATGTACCTGCTATTCCATTAGGGGCATTGTTGGCAGCTGCTCATCCTCTTATGTCTCTTCCTCCTTATGTATTGTCTTGGTTAACTTCTCTGGTTTCTGCACAGAAGATCCCTCCTGAGTCACTTGAAAAACTTGTCTTGAACAACTTTGGTACAGTACCCTCTAAGCTCCTCTTGCAGCTAACAACAGCTTTCCAAGAGGGTGGACTACGTGACAGAAATGGAACTTTCTTTTATAAGCATCATCTCCACAAAAGCAATGTTCCTGTTCTAGCAATTGCAGGAGACCGAGACGTAGTCTGTCCACCTGAAGCTGTATATGAGACAGTCAAGCACATTCCTGGGAATTTAGTTACTTACAAAGTTTTTGGAGAACCAGATGGTCCACATTATGGTCACTATGACTTAGTAGGAGGCCCTTCGGCAGCTGATCAAGTGCATCCATGTTTATCTAAATTTCTCATCCATCATGATATGGCCTGA 1617 45.95 MGARKRTTKMALRHSEPVCFSHFCPARFRSRRQLRVSRAGSSVPRLRPPAVLVAAAREAHVNKPSVCTADELHRVAVTDSDWSLALWRYTPSPKAERRNHPLLLLSGIGTNAIGFDLAPESSFARYLSNQGFDTWILELRGAGLSTLVGESREVKKPFKAMSDRVGTNGVLPAEAPSTVISGTLVETFIPSVKGKRMVVESDDAQSVSKLSETSTHLFQKLSRFLNEGVFEERQNFSIASQIRDLSGRHVNIIKEGQWTISPPLFDLKEVFLTLLDDFQKQLDLILKYNWDFDHHMKEDVPAAMEYIRTLCKPKDGKLLAIGHSMGGILLYAMLSQSGSEGRDSGLASVITLASSLDFTSSKSSLKLLLPLADPAQALNVPAIPLGALLAAAHPLMSLPPYVLSWLTSLVSAQKIPPESLEKLVLNNFGTVPSKLLLQLTTAFQEGGLRDRNGTFFYKHHLHKSNVPVLAIAGDRDVVCPPEAVYETVKHIPGNLVTYKVFGEPDGPHYGHYDLVGGPSAADQVHPCLSKFLIHHDMA* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3086514 3092680 + Vvi17g277 Vvi17g277 778974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g277 538 PIRSF UCP031088_abhydr 5 538 IPR016969 -
Vvi17g277 538 PANTHER PUTATIVE-RELATED 52 535 - -
Vvi17g277 538 SUPERFAMILY alpha/beta-Hydrolases 80 535 IPR029058 -
Vvi17g277 538 Gene3D alpha/beta hydrolase 283 533 IPR029058 -
Vvi17g277 538 Gene3D alpha/beta hydrolase 68 158 IPR029058 -
Vvi17g277 538 PANTHER LYSOSOMAL ACID LIPASE-RELATED 52 535 - -
Vvi17g277 538 Pfam alpha/beta hydrolase fold 101 510 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g277 - - - vvi:100247368 1008.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g357 Vvi17g277 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g277 . Blo16g00128 . . . Bpe13g00365 . . . Cmo18g00043 . . . . . . . . . . . . . . . . . . . . . Cone2ag0742 . . . Lsi02g00213 Csa01g00695 Chy12g01416 Cme12g01852 . . . . . . . . Sed08g2743 . . . Cma18g00053 . Car18g00047 Cpe09g01127 . Bhi08g01263 Tan05g2228 Cmetu09g1201 Lac10g0266 Hepe07g2371 . . Cla04g01069 Cam04g1113 Cec01g1627 Cco01g1673 Clacu04g1139 Cmu04g1121 Cre01g1422 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006608 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38