Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g28 ATGTTGTCGGGGGTGAACGGCGTGGTGTGGATGGAGGGGAGAGAAGAGGAGGAGGAGGCTGCTTCATGGATCAGAAACAGCAATAACAACAACGGCGGCGGCAGCAGCTGTGGAGTGGAAATTAGAGATATTTCCTTCTCTACTAACCTGGCTGGAGCTGATAATTTGCTGCTGCACCCAGTGGACTCGTCGTCTTCGTGTTCTCCGTCGTCTTCAGTGTTCAACAATCTCGACCCATCTCAGGTGCAGTTCTTCTTGCCTCCAAAACCCACCTTATCTTCACTCCTCAACCTCATTTCCAACAACCCTTTAGAGCATAGCTTTGATATGGGTTGCGAGCAGGGGTTCTTGGAGACTCAAGCTCCAAATTCCCAGACTTTGATGAACACTCCTAATCTGATCTCTGAGCCTCAATTTGGAATCACCCGGGTGCTCCAACTGACCGAAAACAGTGCTCCTATTGGCGCCGGGTTCAGTTCATCGGGGATTCGAGGTTTTGAGGAGGGTTCTATGAACTCTTTGTTTGTGAATAGGTCTAAGTTGCTGAGGCCTCTCGAAACTTTCCCTTCAGTGGGTGCACAGCCCACTCTCTTTCAGAAGAGAGCAGCTTTGAGGAAGAATTTAGCTGATAATGGCAGCATTTTGGGGGGTTTGGGGCCTGAAGGTGGTCAGAGGGAAATGGGTGAAGAAAATGATAGGAAGTGGAGAAACAGCAATGCAGAAGATATTGAGGATGCCAGCATTGATGCGTCGGGTTTGAATTATGATTCGGATGAGCTTACAGAGAATAACAAGATGGAGGAGAATGGCAAGAACAGTGGGAACAACTCAAATGCAAATAGCACTGTTACTGGTGGAGATCACAAGGGGAAGAAGAAGGGTCTCCCTGCTAAAAATTTAATGGCAGAGAGGCGCCGCCGGAAGAAGCTCAATGATAGGCTGTACATGCTGCGATCTGTTGTCCCAAAAATTAGCAAGATGGATAGGGCTTCAATCCTTGGGGATGCAATTGAGTACTTGAAGGAACTTCTGCAAAGGATCAACAACCTCCATAATGAACTGGAGTCCACCCCTCCTGGCTCGTCACTGACACCTACCACAAGCTTCCACCCTTTGACACCAACCCCTCCTACCCTTCCCTGCCGTATCAAGGAAGAACTTTGCCCAAGCTCATTATCAAGCCCGAATGGTCAACCTGCAAGGGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCCTTGGGCTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGGTTTGCTTTGGATATTTTTCGAGCTGAGCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAG 1458 48.9 MLSGVNGVVWMEGREEEEEAASWIRNSNNNNGGGSSCGVEIRDISFSTNLAGADNLLLHPVDSSSSCSPSSSVFNNLDPSQVQFFLPPKPTLSSLLNLISNNPLEHSFDMGCEQGFLETQAPNSQTLMNTPNLISEPQFGITRVLQLTENSAPIGAGFSSSGIRGFEEGSMNSLFVNRSKLLRPLETFPSVGAQPTLFQKRAALRKNLADNGSILGGLGPEGGQREMGEENDRKWRNSNAEDIEDASIDASGLNYDSDELTENNKMEENGKNSGNNSNANSTVTGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINNLHNELESTPPGSSLTPTTSFHPLTPTPPTLPCRIKEELCPSSLSSPNGQPARVEVRAREGRAVNIHMFCGRRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDIFRAEQSKEGQDVHPEQIKAVLLDSAGFHGMM* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 232690 236378 - Vvi17g28 Vvi17g28 778725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g28 485 Coils Coil 333 357 - -
Vvi17g28 485 MobiDBLite consensus disorder prediction 286 300 - -
Vvi17g28 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Vvi17g28 485 Gene3D - 288 357 IPR036638 GO:0046983
Vvi17g28 485 PANTHER TRANSCRIPTION FACTOR ICE1-LIKE ISOFORM X1 127 485 - -
Vvi17g28 485 PANTHER TRANSCRIPTION FACTOR ICE1-LIKE ISOFORM X1 61 127 - -
Vvi17g28 485 CDD bHLH_AtAMS_like 297 362 - -
Vvi17g28 485 MobiDBLite consensus disorder prediction 211 235 - -
Vvi17g28 485 SMART finulus 300 349 IPR011598 GO:0046983
Vvi17g28 485 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 127 485 - -
Vvi17g28 485 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 127 - -
Vvi17g28 485 MobiDBLite consensus disorder prediction 264 300 - -
Vvi17g28 485 Pfam Helix-loop-helix DNA-binding domain 301 343 IPR011598 GO:0046983
Vvi17g28 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 363 IPR036638 GO:0046983
Vvi17g28 485 MobiDBLite consensus disorder prediction 267 285 - -
Vvi17g28 485 CDD ACT_UUR-ACR-like 414 474 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1103 Vvi17g28 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14185 PF00010 HLH 1.80E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g28 - - vvi:100245749 805.053