Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g284 ATGGCGGTGGCGACACCCACGACCTTTGGGTTCAAGAATTTGATAGAGACGTTCACGGTGGATGTGCAGAGAGCGGAGGGGAGGCCCTTGAATGTGCCCTTGATCGCCCCTTTTACTATTGCATCGTCGAGGCTGGAGAGGGTGGAGAACGTGGCGATTAGAATTGAGTTGAAGAATGGGTGTGTGGGGTGGGGTGAGGGCCCGATTCTGCCGTTTGTGACTGCGGAGAATCAGGCGACAGCGATGGCTAAGGCGGCGGAGGTTTGCGAGGTTCTGCGGCGGAGACCGGCGATGACTCTGGGTATGTTGTTGGGTGAGATTGGTGAGGCTCTTCCTGGTCATGAATTTGCTTCTGTTAGGGCGGGAGTTGAGATGGCATTGATTGATGCAGTTGCTAATAGCATGGGCATCCCTTTGTGGAGACTATTTGGTGGAGTGTCAAATGCCATAACTACTGATATAACAATTCCAATTGTTTCCCCTGCTGATGCTGCTGAATTGGCTACAAAGTATCGCAAACAAGGATTCAAGACCTTGAAGCTTAAGGTGGGAAAGAATCTGAATGCAGACATAGAAGTTCTTCAAGCCATTCGTGTGGCACACCCTGATTGCTTATTTATCTTGGATGCTAATGAAGGATACACTCCAAAGGAAGCCATTGAAGTTCTTGAAAAGCTACATGAAATGGGAGTGACTCCTGTTCTATTTGAACAACCTGTTCATAGGGATGATTGGGAAGGTCTTGGTCATGTTAGTAAAGTTGCAAGAGACAAATATGGGGTATCTGTTGCCGCTGATGAGAGCTGCCGGAGTTTAGTTGATGTTAAGAAAATAGTGGAAGGAAACCTTGCAAATGTCATTAATATTAAACTAGCAAAAGTTGGGGTCCTTGGGGCCCTTGAAATTATTGATGCAGCAAGAGCAGCGGGGCTTGATCTAATGATAGGTGGCATGGTTGAAACTAGATTAGCGATGGGCTTTGCTGGCCATCTTGCTGCTGGCCTTGGGTGTTTCAAATTCATTGACCTAGATACACCTCTTTTGCTGTCAGAAGATCCCGTTCAGGAGGGATATGATGTCTCGGGTGCTGTTTACAAGTTCACAAATGCCAGGGGCCATGGTGGTTTCCTTCATTGGGATAATATTAAATTAAACTTTGGTTGCTTCCACAACTTCAAAACTCTGAGCAACAGCAGATCTTATTAG 1206 46.77 MAVATPTTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGEGPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMALIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKNLNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWEGLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAARAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYKFTNARGHGGFLHWDNIKLNFGCFHNFKTLSNSRSY* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3148655 3153072 + Vvi17g284 Vvi17g284 778981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g284 401 SMART MR_MLE_2 161 255 IPR013342 -
Vvi17g284 401 PANTHER O-SUCCINYLBENZOATE SYNTHASE-RELATED 5 382 - -
Vvi17g284 401 SUPERFAMILY Enolase N-terminal domain-like 22 145 IPR029017 -
Vvi17g284 401 CDD L-Ala-DL-Glu_epimerase 28 349 IPR034603 GO:0016855
Vvi17g284 401 Pfam Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 33 144 IPR013341 -
Vvi17g284 401 Gene3D - 29 135 IPR029017 -
Vvi17g284 401 Pfam Enolase C-terminal domain-like 165 374 IPR029065 -
Vvi17g284 401 SFLD o-succinylbenzoate synthase 25 356 - -
Vvi17g284 401 Gene3D - 136 364 IPR036849 -
Vvi17g284 401 SFLD Enolase 25 356 - -
Vvi17g284 401 SUPERFAMILY Enolase C-terminal domain-like 134 382 IPR036849 -
Vvi17g284 401 PANTHER O-SUCCINYLBENZOATE SYNTHASE 5 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g284 - - - vvi:100250697 755.362
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g284 . . . . . . . . . . . Cma11g00289 . Car11g00263 . . Cpe04g01391 . . . . . . . Cla06g01449 Cam06g1602 Cec06g1664 Cco06g1658 Clacu06g1567 Cmu06g1520 Cre06g2331 . . . . . . . . . . . . . . . . . . Cmo11g00292 . . . . . . . . . . . . . . . . . . . . Lsi06g01315 Csa01g00401 Chy02g02348 Cme02g01725
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002956 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 1 54