Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g287 ATGTCGGAGTGCCCAGCGATCGGGAAGCAGTTCGCGGCCGAAGAAATTTCGGCCCAGGTACTAAGAAAGCTTGTTGATGATGCCTCGAAGTTTCTGAATGATAAAGTCACAAAAGCTGTGGTCACAGTGCCTGCTTACTTCAATGACTCCCAGAGGACAGCAACAAAGGATGCTGGTCGCATTGCTGGATTAGAAGTTCTTAGGATCATCAATGAACCTACTGCTGCTTCACTGGCATATGGGTTTGAAAAGAAAAACAATGAAACCATTCTGGTATTTGACCTTGGGGGTGGTACTTTTGATGTCTCAGTTCTCGAGGTTGGCGACGGAGTGTTTGAGGTGCTTTCCACTTCAGGAGATACACATTTGGGTGGTGACGACTTTGACAAGAGAGTTGTGGATTGGTTGGCTGCAAGTTTTAAGAAAGATGAGGGTATAGATCTTCTCAAGGACAAACAAGCTCTTCAGCGTCTAACAGAGACAGCTGAGAAGGCAAAAATGGAGCTATCATCCTTGACACAGACAAATATTAGCTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAAGATCTTGATGAGGTGATCCTTGTTGGTGGATCAACACGTATCCCTGCTGTTCAGGAGCTTGTAAAGAAAATGACAGGAAAGGACCCCAATGTCACAGTCAATCCGGATGAAGTCGTCGCCCTAGGGGCTGCTGTGCAGGCTGGTGTTTTGTCTGGAGATGTCAGTGACATTGTGCTCTTGGATGTGTCTCCATTGTCTCTGGGTCTAGAGACATTGGGTGGTGTAATGACAAAAATCATCCCAAGAAACACAACATTGCCCACCTCCAAATCAGAGGTGTTCTCAACAGCAGCAGATGGACAGACTAGTGTTGAGATCAATGTACTTCAAGGTGAGAGAGAGTTTGTAAGAGACAATAAGTCTCTAGGCAGCTTCCGACTGGATGGTATCCCTCCTGCACCGCGGGGAGTTCCTCAGATTGAAGTCAAATTTGACATTGATGCCAACGGCATTCTTTCTGTCACTGCTATTGACAAAGGCACAGGGAAGAAACAAGACATCACCATTACAGGTGCTAGCACCTTGCCCACTGATGAGGTGGAGAGGATGGTTAGCGAAGCAGAGAGGTTTGCAAAGGAGGACAAGGAGAAGAGAGATGCCATAGATACAAAGAATCAAGCTGATTCTGTGGTCTACCAGACAGAAAAACAGCTGAAGGAGCTGGGAGATAAGGTTCCTGCCCAAGTTAAAGAGAAGGTTGAGGCAAAACTTGGGGAGCTGAAGGATGCAATCTCAGGAGGGTCGACCCAGGTCATGAAGGATGCCATGGCTGCCCTGAACCAGGAAAGTCATCAGGAAAGGGACCGGATGGTGATGTGA 1503 46.71 MSECPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAASFKKDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVSPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPTDEVERMVSEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAQVKEKVEAKLGELKDAISGGSTQVMKDAMAALNQESHQERDRMVM* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3189752 3194345 + Vvi17g287 Vvi17g287 778984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g287 500 ProSitePatterns Heat shock hsp70 proteins family signature 2. 92 105 IPR018181 -
Vvi17g287 500 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 280 436 IPR029047 -
Vvi17g287 500 SUPERFAMILY Actin-like ATPase domain 7 84 IPR043129 -
Vvi17g287 500 ProSitePatterns Heat shock hsp70 proteins family signature 3. 233 247 IPR018181 -
Vvi17g287 500 Gene3D Actin; Chain A, domain 4 125 212 - -
Vvi17g287 500 PANTHER 70 KDA HEAT SHOCK PROTEIN 2 494 - -
Vvi17g287 500 PRINTS 70kDa heat shock protein signature 39 59 - -
Vvi17g287 500 PRINTS 70kDa heat shock protein signature 98 108 - -
Vvi17g287 500 PRINTS 70kDa heat shock protein signature 230 246 - -
Vvi17g287 500 PRINTS 70kDa heat shock protein signature 261 281 - -
Vvi17g287 500 PRINTS 70kDa heat shock protein signature 284 303 - -
Vvi17g287 500 PRINTS 70kDa heat shock protein signature 365 381 - -
Vvi17g287 500 Pfam Hsp70 protein 3 498 IPR013126 GO:0005524|GO:0140662
Vvi17g287 500 SUPERFAMILY Actin-like ATPase domain 87 278 IPR043129 -
Vvi17g287 500 Gene3D - 403 498 IPR029048 -
Vvi17g287 500 PANTHER HEAT SHOCK PROTEIN 70KDA 2 494 IPR013126 GO:0005524|GO:0140662
Vvi17g287 500 Coils Coil 148 175 - -
Vvi17g287 500 Gene3D - 8 274 - -
Vvi17g287 500 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 275 401 IPR029047 -
Vvi17g287 500 Gene3D - 81 262 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g287 K03283 - vvi:100249184 933.324