Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g288 ATGCTTCTTCTCCATGAGTTCCGCCGAATGGGTACCAAGCTCTTTCAATCATTCATCCTACACTCCCCCATCACCTTCTTCTCCATCTTCATCACCAGCTTCTGCGATGATAACCAGCAATATGAGGAGTGCACAAGTCGTCTGTACGAGTGCGGAGACATGAAAGGCATAGGGTATCCTTTCTGGGGAGATGGTCGACCTCAATTCTGTGGGCAAGGGTTCGAGCTCAAGTGCCAGGATGATGATTACCCTCTTATAGCTATTGGTTCTTTGGAATTCCGAGTACTCAATATCAGTAATTCCACTTATGCTATGAGAATAGCCCGAAAGGATTTCTGGGATCAAACTTGTCCTAAAGAATTCCAATCCACGACTCTCAATTACACGTTGTTTGATTATGCTGGTACCGATCGAAACCTCACCTTATTTTACGGTTGCCCCGATGAGGTGTTGTCCCAACTCCCGGCTACCTGGAATATTAGTAATAATTTTACAGGCTCAGTTGAAGGTATAAATGATACCACTGTTTTCTACGCGGATGAAGCGTTTCTGGGGCTTGATCAGCACCTTGCAATCCTAAGGACTTGCAAAATCAACGTCACGCTTCCCGTTCTAGGAGCCGCTATTGATGAACTCAATGCCAATAGGACAGGGGGCGAAGTTAGTAACGGAGAGGGACTGGAAAAGGCTTTGAATATGGGATTTGATGTGGATTATAGCGTAGTCACAGGGTTGTGTGTGCAGTGTAATGCGTCCGGTGGAATATGCGGATCATCCAGCACGTCTCAATTTAGCTGCCTTTGCCGTGATAAATCTTATCCATACTCGTGTCAAAAATCAGAGTCTGCAAACATTCCAAAGACAATCATGATGGCCGTTGTTGCAGCAGGAGTTGGGACATTATTCGCCAGCATTCTTATAATCTTTTGCTTCAAAAGAAAAATATCAAAACATAGACTAATGTTCATTTGGAGAAAGAGATCTGATGCTGATCAAAACATTGAAGAATTTGTTAGGAATTATGGATCTCAAGCTCCTAAGAGGTATAGTTATTCAAATGTTAAGAAAATGACTAATGCATTCAAGGATAAATTAGGCCAAGGAGGCTATGGAGGTGTTTACAAAGGAAAGTTAGGTGATGGTCATCTTGTCGCAGTCAAAGTCCTCAACACGTCCAAAGGAAATGGAGATGAATTCATTAATGAAGTTGCAAGCATTAGTCGGACTTCTCATGTCAATATTGTCAGACTTTTGGGCTTTTGTTTTGAGGGTGGCAAAAAAGCTCTTATATATGAATTTATGAGCAATGGGTCTCTTGAAAACTTCTTAGGCAGTGAAAATCCTTTGAAAGTCAGTAAACACTTGGGATGGGAGAAGTTGTATCAAATTGCAGTTGGGATAGCAAGAGGACTTGAATACTTGCATTGTGGCTGCAGAACAAAGATATTGCATTTTGATGTGAAACCACACAACATCCTTCTAGACCAAGACTTTTCCCCCAAAATCTCTGATTTTGGGCTTGCTAAATTATGCCCACCAAAAGAGAGTATTATATCAATGTCAGCAGCTAGAGGAACTATTGGGTATGTTGCTCCAGAAGTGTTCTGTAGAAATTTTGGCCAAGTCTCACACAAATCCGACGTCTATAGCTATGGAATGATGGTTCTAGAAATGGTTGGAGGAAGACAAAACGTCAATGGCACAGTGGGTCACACCAGCGAGACATATTTTCCGCATTGGATTTATAAGCATCTTGAGCAGCAAGAAGATCTGGGACTAGAAGGCATTGAGAACAAAGAGGAAAATGAAATTACAAGGAAGATGATAGTTGTGGGTTTATGGTGCATACAAACAAATCCATCACACAGGCCATGCATGAGTAAGGTGATTGAAATGTTGGAAGGAAGCATAGAAGCCTTACAGATCCCACCAAAGCCTTTCTTATCTTCTCCTCCAAGGTTTCCGATAGATTCTTCATCCTTCAAATCAACACTATCACAATAA 2004 41.77 MLLLHEFRRMGTKLFQSFILHSPITFFSIFITSFCDDNQQYEECTSRLYECGDMKGIGYPFWGDGRPQFCGQGFELKCQDDDYPLIAIGSLEFRVLNISNSTYAMRIARKDFWDQTCPKEFQSTTLNYTLFDYAGTDRNLTLFYGCPDEVLSQLPATWNISNNFTGSVEGINDTTVFYADEAFLGLDQHLAILRTCKINVTLPVLGAAIDELNANRTGGEVSNGEGLEKALNMGFDVDYSVVTGLCVQCNASGGICGSSSTSQFSCLCRDKSYPYSCQKSESANIPKTIMMAVVAAGVGTLFASILIIFCFKRKISKHRLMFIWRKRSDADQNIEEFVRNYGSQAPKRYSYSNVKKMTNAFKDKLGQGGYGGVYKGKLGDGHLVAVKVLNTSKGNGDEFINEVASISRTSHVNIVRLLGFCFEGGKKALIYEFMSNGSLENFLGSENPLKVSKHLGWEKLYQIAVGIARGLEYLHCGCRTKILHFDVKPHNILLDQDFSPKISDFGLAKLCPPKESIISMSAARGTIGYVAPEVFCRNFGQVSHKSDVYSYGMMVLEMVGGRQNVNGTVGHTSETYFPHWIYKHLEQQEDLGLEGIENKEENEITRKMIVVGLWCIQTNPSHRPCMSKVIEMLEGSIEALQIPPKPFLSSPPRFPIDSSSFKSTLSQ* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3215528 3219814 + Vvi17g288 Vvi17g288 778985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g288 667 Gene3D Phosphorylase Kinase; domain 1 331 433 - -
Vvi17g288 667 Pfam Wall-associated receptor kinase C-terminal 185 271 IPR032872 -
Vvi17g288 667 Pfam Protein kinase domain 362 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g288 667 ProSiteProfiles Protein kinase domain profile. 359 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g288 667 MobiDBLite consensus disorder prediction 653 667 - -
Vvi17g288 667 SUPERFAMILY Protein kinase-like (PK-like) 338 634 IPR011009 -
Vvi17g288 667 SMART serkin_6 359 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g288 667 Gene3D Transferase(Phosphotransferase) domain 1 434 642 - -
Vvi17g288 667 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Vvi17g288 667 PANTHER - 24 663 - -
Vvi17g288 667 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 663 IPR045874 GO:0004672
Vvi17g288 667 MobiDBLite consensus disorder prediction 648 667 - -
Vvi17g288 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Vvi17g288 667 Pfam Wall-associated receptor kinase galacturonan-binding 44 109 IPR025287 GO:0030247
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g348 Vvi17g288 ECH
Vvi14g858 Vvi17g288 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76311 PF00069 Pkinase 2.10E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g288 - - vri:117904185 1263.44