Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g289 ATGGGTTCCAAGCTTTTTCAATCATTCATCCTACACTCCCCCATCACCACCTTCTTCTTCATCTTCATCGCTATTCCTATGTGCTTCTGCGTTGATAACCAACAATATGAGGAGTGCACAAGTAGTCTGTACGAGTGCGGCGACATGAAAGGCATAGGGTATCCTTTCTGGGGAGATGGTCGACCTAAATTCTGTGGGCAACAAGGGTTCGAGCTCAAGTGCCAGAATGATGATTACCCTCTTATAGATATTGGTTCTTTGGAATTCCGAGTACTCAATATCAGTAATTCCACTTATGCTATGAGAATAGCCCGAAAGGATTTCTGGGATCAAACTTGTCCTAAAGAATTCCAATCCACGACTCTCAATTATACGTTGTTTGATTATGCTGGTACCGATCGAAACCTCACCTTATTTTACGGTTGCCCCGATGACGTGTTGTCCCAACTCCCGGCTACCTGGAATATTAGTAATAATTTTACATGCTCAGTTGAAGATATAAATGATACCACTGCTTTCTACGCGGATGAAGCGTTTCTGGGGCTTGATCAGCACCTTGCAATCCTAAGGACTTGCAAAATCAACGTCACGCTTCCCGTTCTAGGAGCCGCTATTGATGAACTCAATGCCAATAGGACAGGGGGCGAATTTAGTAACGGAGAGAGACTGGAAAAGGCTATGAATATGGGATTTGATGTGGATTATAGCGTAGTCAGAGGGTTGTGTGTGCACTGTAATACGACCGGTGGAATATGCGGATCATCCAGCACGTCTTCATTTAGCTGCCTTTGCCGTGATAAATCTTATCCATATTCGTGTCAAAAATCAGAAGCCAAGCCAACTCCATTGAAATTGTCTTCAAATGCTCCCCTCCAACTCCCCACTTTTCTTCATCTTCTCTGTTTTCCTCTGTTCTCTCTCTCCATTCCTCTTCAAATGGATGCCCAGAACATCTTCATATGGAAAAGTACCTTCTGTATAATTGTAGTCATTATCATCTTCACCAGCTTTGTTATTGAAACCCTATCTGCTGATCCAAAGTTTGAGGCCTGCAAGCCTCACAATTGTGGGACAGGTCCAAATGTAAGCTACCCCTTTTGGATTCCTAAAGAACAAGAATCCTATTGTGGTTTCCCAAATTTCTCAATCACTTGCAATGATGAAAAACCAGTGCTCACTATTTCTGATGATTATTATGTCATTAGAGAGATCTTTTACACCAACCACTCGTTTCTCATGTCTAATTCTGCTGTCTATGATGGTGATTCATGCCCAACTCCTCTGCATAACTTTAGTCTTGATAGGACTCCATTCAATTACAGTCCTTCTCATTATGATCTCTTGTTGTTCTACAACTGCACTTCTGTTCCTGTTGAGACCTTAACAATTCCAATTGATTGCATGAGCAATGCTACTCTTCACTCCTTTGCTAGCTTTCATGAGGAAGCTTTGGAGTACATGAATTTTTCTACAGAGTCATGCCAATCTATGGTTAATGTGCCTGTCGATATTGATGGTGAAGAGGGTTTTGGAAATTTGTTAAACTGGAATTTCACAGAGATTTTGAGGGAGGGGTTTGTTTTGAGTTGGACTGCAAATAATTGTAGCTCTTGTGAGAGAAGTGGTGGGCGTTGTGGATTTGAAAACAATGAATTCATCTGTTTTTGCCAGGATCGCCCACATCTCAGAACTTGCCATGATGAGGGACTAAACTATCACAGGAAGGTTATTATAGGTGTTTGTGCTGGATTAGGTACTCTCCTTATTTCAAGCATTTTTTTCCTCATGTATCTACGCCGCTACAAGAAGCGCTATCCTCCACCTTTGTTCTCTCGAAATATCTCTTCTGATCCCTCTTCGAAGACAATTTTTGAGAGCCAGGGCAGCTTACACGGAGTCCATATATTCACTTACGAAGAACTTGAAGAAGCCACTAACAATTTTGATTCCAGCAAAGAACTAGGAGATGGAGGCTTTGGCACCGTATATCATGGCAAACTCCGTGATGGTCGTGTTGTTGCTGTGAAGCGCTTATATGAAAACAATTACAAGAGGGTTGAGCAGTTCATGAATGAAGTTGAGATCCTCCAACTTTTGCGCCACCGAAACCTAGTCTCCCTATATGGGTGCACCTCTCGCCACAGCAGAGAGCTCCTCCTTGTATATGAATACGTTCCTAACGGTACTGTTGCTGATCATCTTCACGGTGAACAAGCTAAACCTGGATCACTCACATGGCCAACTCGAATGAAAATTGCCATAGAGACTGCAAGTGCATTGAAATATCTCCATGCTTCTGATATCATCCACCGTGATGTCAAAACCAACAATATTCTCCTTGACAGCAACTTCTCTGTGAAAGTTGCAGATTTTGGGCTGTCCCGTCTCTTCCCGACAGATGTTACCCATGTTTCAACTGCTCCACAAGGAACTCCTGGATATGTTGATCCCGATTATCACCAATGCTACCAGCTTACAAGCAAGAGTGACGTCTATAGCTTTGGGGTGGTCCTGATTGAGCTTATATCATCCATGCCTGCTGTTGATATCACTAGGCACCGGCATGAGATTAACTTGTCTAACATGGCTATCAACAAGATCCAAAACCATGCATTGCATGAACTTGTTGACCGTTCCCTTGGGTTTGATTCAGACCAGAACATAAGGAGGATGATAATGGCAGTGGCAGAGTTGGCATTTCAGTGTTTGCAAAATGAGAAGGAAATGAGACCTGCTATGGATGAAGTGCTTGAGGTTCTAATGGGCATTGAGAGTGAGGGTTGCAATATAGTAAAGACAGAGGAGGTGGAGATTCCAGCAGACAGTGTTGGGTTGTTGAAGAGTAAGCAACCACCAGCTTCACCGGATTCTGTGACTACAAATTGGACTAGTTGGCCCTCAACTACTAATGGCAGCAGCTGA 2922 43.02 MGSKLFQSFILHSPITTFFFIFIAIPMCFCVDNQQYEECTSSLYECGDMKGIGYPFWGDGRPKFCGQQGFELKCQNDDYPLIDIGSLEFRVLNISNSTYAMRIARKDFWDQTCPKEFQSTTLNYTLFDYAGTDRNLTLFYGCPDDVLSQLPATWNISNNFTCSVEDINDTTAFYADEAFLGLDQHLAILRTCKINVTLPVLGAAIDELNANRTGGEFSNGERLEKAMNMGFDVDYSVVRGLCVHCNTTGGICGSSSTSSFSCLCRDKSYPYSCQKSEAKPTPLKLSSNAPLQLPTFLHLLCFPLFSLSIPLQMDAQNIFIWKSTFCIIVVIIIFTSFVIETLSADPKFEACKPHNCGTGPNVSYPFWIPKEQESYCGFPNFSITCNDEKPVLTISDDYYVIREIFYTNHSFLMSNSAVYDGDSCPTPLHNFSLDRTPFNYSPSHYDLLLFYNCTSVPVETLTIPIDCMSNATLHSFASFHEEALEYMNFSTESCQSMVNVPVDIDGEEGFGNLLNWNFTEILREGFVLSWTANNCSSCERSGGRCGFENNEFICFCQDRPHLRTCHDEGLNYHRKVIIGVCAGLGTLLISSIFFLMYLRRYKKRYPPPLFSRNISSDPSSKTIFESQGSLHGVHIFTYEELEEATNNFDSSKELGDGGFGTVYHGKLRDGRVVAVKRLYENNYKRVEQFMNEVEILQLLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGEQAKPGSLTWPTRMKIAIETASALKYLHASDIIHRDVKTNNILLDSNFSVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPDYHQCYQLTSKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNMAINKIQNHALHELVDRSLGFDSDQNIRRMIMAVAELAFQCLQNEKEMRPAMDEVLEVLMGIESEGCNIVKTEEVEIPADSVGLLKSKQPPASPDSVTTNWTSWPSTTNGSS* 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3220545 3228158 - Vvi17g289 Vvi17g289 778986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g289 973 Gene3D Phosphorylase Kinase; domain 1 620 724 - -
Vvi17g289 973 ProSiteProfiles Protein kinase domain profile. 648 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g289 973 Gene3D Transferase(Phosphotransferase) domain 1 725 932 - -
Vvi17g289 973 MobiDBLite consensus disorder prediction 952 973 - -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 283 IPR044652 -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 326 964 IPR044652 -
Vvi17g289 973 SUPERFAMILY Protein kinase-like (PK-like) 624 921 IPR011009 -
Vvi17g289 973 SMART serkin_6 648 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g289 973 Pfam Wall-associated receptor kinase C-terminal 175 267 IPR032872 -
Vvi17g289 973 Pfam Wall-associated receptor kinase C-terminal 481 558 IPR032872 -
Vvi17g289 973 MobiDBLite consensus disorder prediction 943 973 - -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 326 964 - -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 14 283 - -
Vvi17g289 973 Pfam Protein tyrosine and serine/threonine kinase 651 919 IPR001245 GO:0004672|GO:0006468
Vvi17g289 973 Pfam Wall-associated receptor kinase galacturonan-binding 39 105 IPR025287 GO:0030247
Vvi17g289 973 Pfam Wall-associated receptor kinase galacturonan-binding 351 412 IPR025287 GO:0030247
Vvi17g289 973 CDD STKc_IRAK 654 923 - -
Vvi17g289 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Vvi17g289 973 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g289 - - - vri:117904184 1241.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g858 Vvi17g289 ECH
Vvi1g344 Vvi17g289 ECH
Vvi1g347 Vvi17g289 ECH
Vvi14g861 Vvi17g289 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76312 PF07714 PK_Tyr_Ser-Thr 9.90E-49 CL0016 Vvi PK