Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g29 ATGGTTTGTATATTTAGCCCCAATGATTTAGATTTAGTCTCCTCTATTTCAAGTCCTTACTGCTTCCCTTTTTCTCTTTTCTTCAGATTTTTCCTATCTCCAAACAAAGATTTAGAAGTTTGTTGCTTCTCAGTCTCAGCAGTCATGGCTAGGGCTCTGGTTCAGTCAACCAATATCTTTGCTTCAGTTGCTGATGGGAAGCATGGAAAGTTTCAAGGGTCTGAGAGAACCAAAAAGTCTGTCAAAATGATGTGTAATGTCCAAGCACCTGGATTGAGGATCAGAGGCTTCTCAGGATTGCGAGGAGCCAATGCTTTAGATAATTTGGTGAGATCAGGCCATGATTTCCATTCCAGAGTGGCAGCTGCTATTTCTGTTCGGGGAGGAAAGGCTAGTCGATGTGTAGCTAGAGCTATGTTTGAGCGCTTCACTGAGAAAGCAATTAAAGTTATTATGCTTGCACAAGAGGAAGCAAGAAGACTTGGTCACAATTTTGTTGGCACTGAGCAGATTCTGTTGGGTCTTATTGGGGAAGGCACTGGTATTGCTGCTAAGGTCCTTAAATCCATGGGAATCAATCTGAAAGATGCCCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGCAGTGGATTTGTTGCTGTCGAGATTCCATTTACGCCTCGAGCAAAGCGTGTTTTGGAACTTTCGCTGGAGGAAGCTCGGCAACTTGGCCATAACTATATTGGATCGGAGCACTTGCTTCTGGGACTACTTCGTGAAGGCGAAGGTGTAGCTGCCCGTGTTCTTGAGAATTTAGGTGCTGACCCTAGTAATATTCGCACTCAGGTCATTCGTATGGTGGGTGAGAGTACAGAAGCTGTTGGTGCTGGTGTTGGAGGAGGAACCACTGGCAATAAGATGCCAACGTTGGAGGAGTATGGTACCAATTTAACAAAGCTGGCAGAGGAGGGTAAATTGGACCCTGTTGTTGGAAGGCAGCAACAAATAGAGCGTGTAACCCAAATTTTGGGTCGACGGACTAAAAATAACCCATGCCTCATTGGAGAACCTGGCGTTGGAAAAACAGCAATTGCAGAAGGCCTTGCACAAAGAATTGCAAATGGTGATGTTCCAGAAACGATTGAGGGGAAGAAGGTTATAACATTGGATATGGGTCTCCTTGTTGCTGGAACAAAATATCGCGGAGAGTTTGAGGAAAGATTGAAGAAGCTAATGGAAGAAATCAAACAAAGTGATGAGATAATACTCTTCATTGATGAGGTACACACCTTAATTGGAGCAGGAGCAGCAGAGGGGGCGATTGATGCTGCTAACATCTTGAAGCCAGCTCTTGCAAGGGGTGAACTGCAGTGTATCGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAGAAAGACCCTGCCTTGGAAAGGAGATTCCAGCCAGTCAAAGTGCCTGAACCATCTGTGGATGAAACCATACAAATTTTGAAAGGGCTTCGGGAGCGGTATGAGATCCATCACAAGCTCCGGTATACGGATGAAGCTTTGGTATCTGCTGCCCGACTGTCATACCAGTACATTAGTGATCGATTTCTTCCTGATAAGGCAATTGACTTGATCGACGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGCTTCCAGAGGAAGCAAGAGAGCTTGAGAAAGAGCTCAGACAGATCACTAAAGAGAAGAATGAAGCAGTACGAAGCCAAGATTTTGAGAAGGCCGGTGAATTACGTGATAGAGAAATGGATCTAAAGGCACAGATCTCAACCCTCATAGACAAAGGCAAGGAGATGACCAAGGCAGAGACTGAGGCAGGAGATATAGGTCCTATGGTGACAGAAGTGGACATTCAGCACATTGTATCTGCTTGGACTGGCATCCCTGTTGAGAAAGTGTCAACTGATGAATCTGATCGTCTCCTCAAGATGGAGGAGACCCTCCACAGACGAGTCATTGGTCAGGATGAAGCTGTTAAAGCCATCAGCCGTGCTATTCGCCGAGCTCGTGTTGGACTCAAGAATCCCAACCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTAGGAAAGTCAGAATTGGCAAAAGCACTAGCTGCTTACTATTTTGGTTCTGAAGAAGCCATGATCCGTCTTGATATGAGTGAGTTCATGGAGAGACACACAGTCTCCAAACTGATTGGTTCACCTCCTGGTTATGTTGGTTATACTGAGGATTCTTGA 2241 45.52 MVCIFSPNDLDLVSSISSPYCFPFSLFFRFFLSPNKDLEVCCFSVSAVMARALVQSTNIFASVADGKHGKFQGSERTKKSVKMMCNVQAPGLRIRGFSGLRGANALDNLVRSGHDFHSRVAAAISVRGGKASRCVARAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAARLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISTLIDKGKEMTKAETEAGDIGPMVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHRRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEDS* 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 236873 248571 + Vvi17g29 Vvi17g29 778726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g29 746 Gene3D UVR domain 549 607 - -
Vvi17g29 746 ProSiteProfiles Clp repeat (R) domain profile. 140 282 IPR004176 -
Vvi17g29 746 ProSiteProfiles UVR domain profile. 557 592 IPR001943 GO:0005515
Vvi17g29 746 Coils Coil 394 414 - -
Vvi17g29 746 Gene3D - 485 629 - -
Vvi17g29 746 Gene3D - 139 287 IPR036628 -
Vvi17g29 746 Pfam AAA lid domain 483 584 IPR041546 -
Vvi17g29 746 CDD AAA 323 475 - -
Vvi17g29 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 579 IPR027417 -
Vvi17g29 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 744 IPR027417 -
Vvi17g29 746 Pfam ATPase family associated with various cellular activities (AAA) 345 461 IPR003959 GO:0005524|GO:0016887
Vvi17g29 746 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 98 744 - -
Vvi17g29 746 CDD AAA 657 736 - -
Vvi17g29 746 PANTHER CHAPERONE PROTEIN CLPC2, CHLOROPLASTIC 98 744 - -
Vvi17g29 746 ProSitePatterns Chaperonins clpA/B signature 1. 435 447 IPR018368 GO:0005524
Vvi17g29 746 Gene3D - 293 483 IPR027417 -
Vvi17g29 746 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 687 705 IPR001270 GO:0005524
Vvi17g29 746 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 732 746 IPR001270 GO:0005524
Vvi17g29 746 SUPERFAMILY Double Clp-N motif 141 282 IPR036628 -
Vvi17g29 746 Coils Coil 546 573 - -
Vvi17g29 746 SMART AAA_5 340 480 IPR003593 -
Vvi17g29 746 ProSitePatterns Chaperonins clpA/B signature 2. 717 735 IPR028299 -
Vvi17g29 746 Pfam Clp amino terminal domain, pathogenicity island component 154 206 IPR004176 -
Vvi17g29 746 Pfam Clp amino terminal domain, pathogenicity island component 230 281 IPR004176 -
Vvi17g29 746 Gene3D - 635 746 IPR027417 -
Vvi17g29 746 Pfam AAA domain (Cdc48 subfamily) 682 745 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g29 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - vvi:100250896 1305.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1105 Vvi17g29 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63