Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g298 ATGGATTCTCTGTTTCAACGCTCCCTCGAAGATCTGATCAAAGGGATTCGCCTTAACCTACTTACCGAACCCACTTTCATCTCCAAATCCACAGACGACATTCGCCGCGAGATCAAGTCCACCGACCTCCACACCAAGTCCGTCGCCCTCCAGAAGCTCACCTACCTCAGCGCCCTGTACGGGCTCGACATGTCTTGGGCCGCTTTCCACGTCGTGGAGCTCATGAGCTCCTCTGCCTTCGCCCACAAGAAGATCGCCTACCTCGCCGCCGCGCACTCCTTCCACGCTGCTACCGATGTCTCCCTCCTCACCACTCATCAGTTCCGTAAGGACCTCAACTCCGCCAACCCCTTCGAGGTAAGCCTCGCCCTCCACTGCTTCTCCATCATCGCCACACCCCACCTCGCTCGCGAATTAACACCGGAAATCTTCACTTTGTTGTCTAGCTCCAAGCCTTCCATTGGAAAAAAGGCTGTGGCGGTCATTTTGAGGGTTTTTAGCCAGTACCCAGATGCGGCTAGGGTTTGTTTTAAGCGTTTGGTTGAGAATTTAGAGAGTTCTGATCCGCATACCTTGTCTGCGGCAATGGGTGTTTTTTGCGAGTTGGCAGTGAAGGACCCTAAATCATATCTGCCCCTGGCGCCAGAGTTTTATAGGATATTGGTGGATTCTAGGAACAATTGGGTATTAATTAAGGCGGTTAAGATATTTGGGAAGTTAGCACCATTGGAGCCAAGGTTGGCAATGAGGGTTGTGGAGCCAATTTGTGAGTATATGAGGAAAACCGGGGCAAAATCATTGATGTTTGAGTGTGTGAGGACTGTGGTGACTAGCTTGGCCGAGTATGAGTCTGCAGTGAAGCTTGCAGTTGTGAAGATTCGGGAATTGTTAGTGGATGATGATTCTAATCTTAAGTACCTAGGGTTGCAGGCGCTGACAGTTGTTGCACCAAAGCACCTGTGGGCGGTTTTGGAGAATAAGGAGGTGGTGATTAAATCTTTGAGTGATGCTGACCCCAATATTAAACTTGAGTCACTGCGCATTCTGATGGTAATGGTGTCTGAGAGAAATGTGGCTGAAATTTCCAGGGTTTTGGTTAATTATGCAATTAAATCAGACCCAGAGTTTTGCAATGAGATTCTGGGTTCCATTTTATCAGCTTGTTCTAGGAATGTTTATGAGATAATTGAGGACTTTGATTGGTATGTATCACTTCTTGGGGAAATGTCGAGGATTCCACATTGCCAGAAGGGTGAAGAGATTGAGCATCAACTTATTGATATTGGTATGAGGGTGAAGGATGCTAGACTGCAGCTTGTTCGTGTTGGCCGGGATCTACTGATTGATCCTGCATTACTTGGTAACCCTTTCTTACACAGGATATTGTCTGCTGCTGCTTGGGTTTCAGGGGAGTATGTTGAATTTTCGAAGAATCCATTTGAACTTATGGAGGCTCTGTTACAACCACGTATTAGTCTCTTGCCTCCATCAATAAGGGCTGTTTATGTTCAGTCTGCTTTTAAAGTACTTATCTTTTGTCTACATTCCTACCTCTTTTACAGGGAAACCATTGCTTGCTCCCCCTCATCTCCTGACAATTTTGTCTCTGAAAGAAAAGATGGTTTCACACATGAATCAATTGGGAACCTGTTGAATCTAATTGAAGTGGCTTTGGGTCCACTATCAGGAAGCCGAGAAGTAGAAATACAGGAGAGGGCACGAAATGTACTTGGTTTAATTGAGTTGATAAAACAAGAGTTACCTGGCTTAGTCAAGAAAGAAGGGAATTTTGAGAGGGAAGGCTTAAAATTTCCCAAAATCATTGAGTTAATGCATGATGCATTCTCCAAGGAGCTTGGTCCAGTCGCAGCAAATGCGCAAGAAAGAGTTCCTATCCCTGATGGGCTAATACTTAGGGAGAATCTTGGTGACTTGGAAATGATTTGTGGCAATGATCAGCTGCCTACATCAAGTTCATTTTCTTTTGGAATTCCTCATTCTAAGGAGAAGGTTGGTCTTCCCCAAAGCAAAGGAGAATCATCTGAAGCATCAACTGAGTCGACATCTCTGCTTGCAGAACACCGCAAGCTTCATGGACTATATTATCTTCCTTCAGAGAAGAATGATGTATCCAATGATTACCCACCTGCTAATGACCCTAAGTTGCAGGATAATCTGAATGATGATGCTAAAGATCTTGTTAAGCTTACAGAGCAGTCGCTTCTTCAAAAGAAAAAGCCAAACCATGCAAAACCTAGGCCGGTGGTGGTAAAATTGGATGAGGGTGATGAAGCACCTATTGCAGCCAAGAAGCTGGAGTTGAAAGAGGATTTGTTGTCTGGTGCGGTGCGAGATGTACTTTTAGGTAATGAAGCTGTATCCACTTCACAAAGTAATCTGACCGATAAATCATCCAGTAAGAGAAGAGGGAAGGAAAAACTAAATACTGATCATCCATCTGGTCCAAAAGAAGAAAGAGAAGAAAATGGTCAGAAAGACAAGCAGAAGAGTAGTCATCGTCATAATAGGCACAAATCTCGTCAAAGAGCGGAAGGGCCCAACAATGTGGTTACACAAACACCACTGATCCCGGATTTTCTTTTATAG 2607 44.92 MDSLFQRSLEDLIKGIRLNLLTEPTFISKSTDDIRREIKSTDLHTKSVALQKLTYLSALYGLDMSWAAFHVVELMSSSAFAHKKIAYLAAAHSFHAATDVSLLTTHQFRKDLNSANPFEVSLALHCFSIIATPHLARELTPEIFTLLSSSKPSIGKKAVAVILRVFSQYPDAARVCFKRLVENLESSDPHTLSAAMGVFCELAVKDPKSYLPLAPEFYRILVDSRNNWVLIKAVKIFGKLAPLEPRLAMRVVEPICEYMRKTGAKSLMFECVRTVVTSLAEYESAVKLAVVKIRELLVDDDSNLKYLGLQALTVVAPKHLWAVLENKEVVIKSLSDADPNIKLESLRILMVMVSERNVAEISRVLVNYAIKSDPEFCNEILGSILSACSRNVYEIIEDFDWYVSLLGEMSRIPHCQKGEEIEHQLIDIGMRVKDARLQLVRVGRDLLIDPALLGNPFLHRILSAAAWVSGEYVEFSKNPFELMEALLQPRISLLPPSIRAVYVQSAFKVLIFCLHSYLFYRETIACSPSSPDNFVSERKDGFTHESIGNLLNLIEVALGPLSGSREVEIQERARNVLGLIELIKQELPGLVKKEGNFEREGLKFPKIIELMHDAFSKELGPVAANAQERVPIPDGLILRENLGDLEMICGNDQLPTSSSFSFGIPHSKEKVGLPQSKGESSEASTESTSLLAEHRKLHGLYYLPSEKNDVSNDYPPANDPKLQDNLNDDAKDLVKLTEQSLLQKKKPNHAKPRPVVVKLDEGDEAPIAAKKLELKEDLLSGAVRDVLLGNEAVSTSQSNLTDKSSSKRRGKEKLNTDHPSGPKEEREENGQKDKQKSSHRHNRHKSRQRAEGPNNVVTQTPLIPDFLL* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3301317 3304411 - Vvi17g298 Vvi17g298 778995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g298 868 MobiDBLite consensus disorder prediction 794 868 - -
Vvi17g298 868 MobiDBLite consensus disorder prediction 804 835 - -
Vvi17g298 868 MobiDBLite consensus disorder prediction 705 726 - -
Vvi17g298 868 PIRSF AP3_delta 1 861 IPR017105 GO:0015031|GO:0030123
Vvi17g298 868 PANTHER DELTA ADAPTIN-RELATED 1 850 IPR017105 GO:0015031|GO:0030123
Vvi17g298 868 Pfam Adaptin N terminal region 28 582 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi17g298 868 MobiDBLite consensus disorder prediction 659 689 - -
Vvi17g298 868 SUPERFAMILY ARM repeat 23 580 IPR016024 -
Vvi17g298 868 Gene3D - 2 593 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g298 K12396 AP3D; AP-3 complex subunit delta - vvi:100261087 1615.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g298 . Blo16g00133 . . . Bpe13g00358 Bma06g00048 . Cmo13g01058 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00189 Csa01g00671 Chy12g01431 Cme12g01869 . . Bda11g01772 . . . . . Sed08g2188 . . . Cma18g00047 Car13g00851 Car18g00041 Cpe09g01133 . Bhi08g01241 Tan05g2259 Cmetu12g1441 Lac10g0245 Hepe07g2382 . . Cla04g01083 Cam04g1135 Cec01g1645 Cco01g1694 Clacu04g1163 Cmu04g1144 Cre01g1440 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009579 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33