Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g299 | ATGGCAACGCCACTAACGGGCGTTGCAGTGTTTTCAAGCCACGTGAATTCGTCGTCTTCGTCTTCCTCCTCCAAGTCTTGCTCGAACAATTCTGAGCTGAAATCCCCTATTCTAATCTTCTCGTTCTTCCACAAAGCAATACGTGTGGAGCTCGATGCGCTTCACCAATCCGCCATGGCGTTTGCCACTGGACAGCGGGCAGATATTCGTCCCTTGTTCAAGCGCTACCACTTCTTGAGATCAATCTATAAGCACCACTGCAATGCGGAGGATGAGGTCATCTTTCCAGCTCTTGATATACGTGTGAAGAATGTAGCACAAACATACTCCCTTGAACACAAGGGTGAAAGTGACCTTTTTGATCATTTATTTGAGCTGCTAAAGTTAAATATGCAAAATGATGAAAGTTTTCCACGGGAATTGGCGTCTTGTACGGGAGCCCTTCAGACATCAGTTAGTCAGCACATGTCCAAGGAAGAGGAGCAGGTCTTCCCTTTGCTTACAGAGAAGTTCTCAGTTGAAGAGCAGGCATCATTAGTTTGGCAGTTTTTTTGCAGCATTCCTGTGAATATGATGGCAAAGTTCCTTCCATGGCTTTCATCCTCTATTTCACCTGATGAATATCAGGATATGCTGAAGTGCTTATACAAGATAGTCCCAGAAGAGAAACTTTTTCGACAGGTTATTTTCACCTGGATAGAAGCGCGAAACTGGGCTAACACAGTTGAAAATTGTACTGATGATCCTCAGCTCCAGTGTTGTAAAGGTTCTAGTACTGGCACATTTATCCAACAGATGGACAAAATAAATTGTGCATGTGAGTCCTCCAACGTTGGGAAAAGGAAATATTTGGAGTCTAGTGATGTTTTTGATACCGGTGGGATACATCCAATAAATGAGATATTGCATTGGCATAATGCTATTAGAAGAGAGTTGAGAGCTATATCTGAGGAGGCTAGGAAGATACAACGTTCAGGAAATTTTACTAATTTATCATCCTTCAACGAGAGGTTGCATTTTATTGCTGAAGTTTGCATCTTTCACAGCATTGCTGAAGATAAGGTAATATTCCCTGCAGTAGATGGAGAACTCTCCTTTTTCCAAGGGCATGCTGAAGAAGATAGTAAATTCAATGAGATTAGGTGCTTGATTGAAAATATTCAAAGTGCAGGAGCAAATTCTACATCAGCTGCTGAATTTTATGGGGAGTTATGCTCACATGCTGACAAAATAATGGAAACTATAAAGAGACATTTCGACAATGAAGAAGTCCAGGTTCTTCCACTTGCTCGGAAGCATTTTAGCTTCAAAAGGCAGCGGGAACTTTTGTATCAAAGCTTGTGCATGATGCCATTGAGATTGATTGAGCGTGTTTTGCCATGGCTGGTAGGATCATTAACTGATGATGAAGCCAAGAACTTTCTTAAAAATATGCATTTAGCAGCTCCAGCATCAGATACTGCTCTAGTAACACTTTTTTCTGGTTGGGCTTGCAAAGCTCGTGCAAAGGGTGTATGTTTGTCCTCAAGTGCAATTGGTTGCTGTCCTGCAAAAGAAATCACTGATATTGAAGAAGATTTTGTTCGACCACAATGTGGATGCACTTCTAACTTGTCTCCTAGAGAACACCCAGTATTTGTTCAAATAGATGGGAACAGAAGACCGGTCAAACGGAATTCATCAGTACCGTGCAAAAATGACCAAGCAACGGATTCTTCAGAGATGATAAGTGCTGATGAACTGTCTTCTAGTAATTGGTCTTGTTGTGTCCCAGATTTAGGTGTAAACGGTAATAATCTGGGATTGGGTTGTCTTTCTACGGTGAAATTTTTGCGTCCCTTGTCGTTCAGTTCTTCTGCTCCTTCTCTTAACTCCAGTCTCTTTATCTGGGAAACAGATAGTAGCTCTTCTCATATTGGGTGCACAGAGCGGCCAATTGATACCATATTTAAATTTCATAAAGCCATTAGCAAAGACTTGGAGTATTTGGATGTTGAATCGGGAAAGCTTATTGATTGTGATGAGACATTCCTTCAGCAGTTCATTGGAAGATTCCGTTTATTGTGGGGCTTATACAGGGCTCATAGTAATGCAGAGGATGAAATAGTTTTTCCAGCATTGGAATCCAAAGAGGCACTTCACAATGTAAGTCACTCATACATGCTTGACCACAAGCAGGAGGAAAATTTATTTGAAGATATTGCTTCTGTCCTTTCTGAGCTTTCACTCCTTCATGAAGACCTGAAAAGAGCCAGTATGACAGAGAATCTAAACAGGAGTCATGATGGCAAGCATCTGAGAAAGTACATTGAATTGGCTACAAAACTTCAAGGCATGTGCAAATCTATAAGAGTCACACTGGATCAGCATATTTTCAGGGAAGAACTTGAGCTGTGGCCACTGTTTGGCCAACATTTTTCTGTGGAGGAACAGGACAAAATTGTTGGCCGCATTATTGGGACTACAGGAGCTGAAGTCCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACTCAGGATGAGCAGAATAAAATGATGGACACATGGAAGCAGGCAACTAAGAACACAATGTTCAACGAGTGGCTCAATGAATGCTGGAAAGGAACTCCAGTGTCACCTTTAAAGACTGAAACATTGGAAAGTAGCATTCCTGAAAAAGGTATCTATTCCCAAGAAAACTTGGATGAGAATGATCAGATGTTCAAGCCAGGGTGGAAAGATATTTTTCGTATGAATCAAAGTGAGCTTGAATCAGAGATCAGAAAGGTTTATCGGGACTCAACTCTTGATCCAAGGCGAAAAGCATATCTTGTTCAAAATCTTATGACTAGTCGCTGGATAGCTGCTCAACAGAAGTTGCCTCAAGAAATAATGGGGGAAAGTTCTAATGGTGAAGATATACATGGACTATCACCATCGTATCGGGATCCAGGGAAACAGGTCTTTGGGTGTGAACACTACAAAAGGAATTGCAAACTCCGTGCTGCTTGCTGTGGCAAGTTGTTCACTTGCAGATTCTGCCATGATGAAGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGCATGCGCTGCCTGAAGATTCAAGCAGTTGGACCAATCTGCAAGACACCTTCATGCAATGGACTTTCAATGGCCAAGTACTATTGCAGTATATGTAAATTTTTTGATGATGAAAGGACCGTATATCATTGTCCATTTTGCAATTTATGTCGCCTTGGGAAGGGTCTTGGAATTGACTATTTTCATTGCATGACATGCAATTGTTGCCTGGGGATGAAGTTAGTGAACCACAAGTGTCTGGAGAAAGGTTTAGAAACAAATTGTCCTATTTGCTGTGATTTCTTGTTCACATCAAGTGCTGCAGTCAGAGCTCTACCCTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGTCACTACACCTGTCCTATTTGTAGCAAATCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTTTGTTGGTCGCTGAGGAGCTTCCAGAGGAATATAGAGATCGTTGTCAGGACATACTTTGCAACGACTGTGGTCGAAAAGGCGCATCACGCTTCCACTGGCTGTATCACAAGTGTGGTTTTTGTGGATCATACAATACCCGGGTGATAAAGACAGAGGCAACGAATTCTGATTGCCCCGCATCAAACCAATGA | 3705 | 41.94 | MATPLTGVAVFSSHVNSSSSSSSSKSCSNNSELKSPILIFSFFHKAIRVELDALHQSAMAFATGQRADIRPLFKRYHFLRSIYKHHCNAEDEVIFPALDIRVKNVAQTYSLEHKGESDLFDHLFELLKLNMQNDESFPRELASCTGALQTSVSQHMSKEEEQVFPLLTEKFSVEEQASLVWQFFCSIPVNMMAKFLPWLSSSISPDEYQDMLKCLYKIVPEEKLFRQVIFTWIEARNWANTVENCTDDPQLQCCKGSSTGTFIQQMDKINCACESSNVGKRKYLESSDVFDTGGIHPINEILHWHNAIRRELRAISEEARKIQRSGNFTNLSSFNERLHFIAEVCIFHSIAEDKVIFPAVDGELSFFQGHAEEDSKFNEIRCLIENIQSAGANSTSAAEFYGELCSHADKIMETIKRHFDNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLRLIERVLPWLVGSLTDDEAKNFLKNMHLAAPASDTALVTLFSGWACKARAKGVCLSSSAIGCCPAKEITDIEEDFVRPQCGCTSNLSPREHPVFVQIDGNRRPVKRNSSVPCKNDQATDSSEMISADELSSSNWSCCVPDLGVNGNNLGLGCLSTVKFLRPLSFSSSAPSLNSSLFIWETDSSSSHIGCTERPIDTIFKFHKAISKDLEYLDVESGKLIDCDETFLQQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYMLDHKQEENLFEDIASVLSELSLLHEDLKRASMTENLNRSHDGKHLRKYIELATKLQGMCKSIRVTLDQHIFREELELWPLFGQHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKGTPVSPLKTETLESSIPEKGIYSQENLDENDQMFKPGWKDIFRMNQSELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQEIMGESSNGEDIHGLSPSYRDPGKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDRKATSEMMCMRCLKIQAVGPICKTPSCNGLSMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGIDYFHCMTCNCCLGMKLVNHKCLEKGLETNCPICCDFLFTSSAAVRALPCGHFMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLVAEELPEEYRDRCQDILCNDCGRKGASRFHWLYHKCGFCGSYNTRVIKTEATNSDCPASNQ* | 1235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 3316244 | 3333781 | + | Vvi17g299 | Vvi17g299 | 778996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g299 | 1234 | ProSiteProfiles | Zinc finger CHY-type profile. | 978 | 1047 | IPR008913 | GO:0008270 | |
Vvi17g299 | 1234 | ProSiteProfiles | Zinc finger RING-type profile. | 1114 | 1156 | IPR001841 | - | |
Vvi17g299 | 1234 | Gene3D | nmb1532 protein domain like | 642 | 873 | - | - | |
Vvi17g299 | 1234 | Pfam | Ring finger domain | 1113 | 1155 | IPR001841 | - | |
Vvi17g299 | 1234 | Gene3D | - | 1185 | 1228 | - | - | |
Vvi17g299 | 1234 | CDD | Hr-like | 39 | 165 | - | - | |
Vvi17g299 | 1234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1108 | 1158 | IPR013083 | - | |
Vvi17g299 | 1234 | CDD | RING-H2_Pirh2 | 1113 | 1156 | - | - | |
Vvi17g299 | 1234 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 24 | 1230 | - | - | |
Vvi17g299 | 1234 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1050 | 1113 | IPR017921 | - | |
Vvi17g299 | 1234 | SUPERFAMILY | CHY zinc finger-like | 977 | 1041 | IPR037274 | GO:0008270 | |
Vvi17g299 | 1234 | Gene3D | nmb1532 protein domain like | 34 | 184 | - | - | |
Vvi17g299 | 1234 | Gene3D | nmb1532 protein domain like | 298 | 446 | - | - | |
Vvi17g299 | 1234 | CDD | Hr-like | 300 | 428 | - | - | |
Vvi17g299 | 1234 | CDD | Hr-like | 647 | 800 | - | - | |
Vvi17g299 | 1234 | Pfam | Hemerythrin HHE cation binding domain | 296 | 430 | IPR012312 | - | |
Vvi17g299 | 1234 | Pfam | Hemerythrin HHE cation binding domain | 44 | 167 | IPR012312 | - | |
Vvi17g299 | 1234 | Pfam | Hemerythrin HHE cation binding domain | 645 | 801 | IPR012312 | - | |
Vvi17g299 | 1234 | SUPERFAMILY | RING/U-box | 1113 | 1159 | - | - | |
Vvi17g299 | 1234 | Pfam | CHY zinc finger | 985 | 1060 | IPR008913 | GO:0008270 | |
Vvi17g299 | 1234 | Coils | Coil | 305 | 325 | - | - | |
Vvi17g299 | 1234 | Pfam | Zinc-ribbon | 1161 | 1218 | IPR039512 | - | |
Vvi17g299 | 1234 | SUPERFAMILY | Zinc hairpin stack | 1051 | 1107 | IPR037275 | - | |
Vvi17g299 | 1234 | PANTHER | CHY ZINC FINGER PROTEIN | 24 | 1230 | - | - | |
Vvi17g299 | 1234 | SMART | ring_2 | 1114 | 1155 | IPR001841 | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g299 | K16276 | - | vvi:100254283 | 2506.86 |