Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g305 ATGGCTTCCAGACTCCTCCAAACCCTCAAAACTACCAGTCCCACCTGCCGCCTCCTCAGCCACCTTTCTACGGCTACAGCGGCGGTGGCGGCGAAGGAATCGTACGAGGATGCAGATGGGATTAGCATGAAAGGGGTTAAAATTTCTGGAAGGCCGCTTTACCTTGATGTGCAGGCAACATCTCCTGTGGACCCTAGGGTTCTCGATGCTATGCTTCCCTACTACCTCTCCAGCTTTGGGAATCCTCATTCCCGGACTCATCTCTACGGCTGGGAATCGGAACTCGCTGTCGAGAAGGCAAGGGCACAGGTGGCGGCGCTAATCAACGCCTCTCCTAAGGAGATTGTCTTCACCTCCGGCGCCACTGAATCCAACAACATTTCCGTCAAGGGCGTCATGCACTTCTACAAGGACAAGAAGCGCCACGTCATCACTACGCAAACGGAGCACAAGCCCGATACAGGGCTCGTGTCGGTGATGGCGGTGAATAATGAGATTGGCGTGATTCAGCCGATTGAAGAAATAGGGAAGATGTTTGGGGCCTTGTATATGCGGCGTAGGCCAAGGATTAGGGTTGAGCCGCAGATGAATGGTGGTGGGCAAGAAAGGGGAATTCGCAGTGGGACAGTCCCAACTCCGCTGGTTGTGGGAATGGGCGCAGCATGTGAGCTGGCAATGAAAGAAATGGATTTGCTAATGGGGTTGAAGGAAGTGGCAGTTTCCAGTGGGAGTGCATGCACAAGTGCAAGTTTGGAGCCCTCATATGTTCTAAGGGCGTTGGGGGTGGATGAGGATATGGCTCATACCTCTATTAGGTTTGGGATTGGGAGGTTTACCACAGACGCTGAAATTGATAGGGCTGTGGAACTCACGGTGCAGCAGGTGGAGAAATTGAGAGAAATGAGCCCACTCTATGAAATGGTGAAGGAAGGAATTGATATTAAAAGTATACAATGGGCACAACACTGA 969 52.01 MASRLLQTLKTTSPTCRLLSHLSTATAAVAAKESYEDADGISMKGVKISGRPLYLDVQATSPVDPRVLDAMLPYYLSSFGNPHSRTHLYGWESELAVEKARAQVAALINASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKPDTGLVSVMAVNNEIGVIQPIEEIGKMFGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMGAACELAMKEMDLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTDAEIDRAVELTVQQVEKLREMSPLYEMVKEGIDIKSIQWAQH* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3359967 3361323 - Vvi17g305 Vvi17g305 779002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g305 322 Gene3D - 152 178 IPR015421 GO:0003824
Vvi17g305 322 Pfam Aminotransferase class-V 54 151 IPR000192 -
Vvi17g305 322 PANTHER CYSTEINE DESULFURYLASE FAMILY MEMBER 43 151 - -
Vvi17g305 322 PANTHER CYSTEINE DESULFURYLASE FAMILY MEMBER 231 308 - -
Vvi17g305 322 PANTHER CYSTEINE DESULFURYLASE FAMILY MEMBER 179 230 - -
Vvi17g305 322 PANTHER CYSTEINE DESULFURYLASE FAMILY MEMBER 151 178 - -
Vvi17g305 322 Gene3D Aspartate Aminotransferase, domain 1 54 63 IPR015422 GO:0003824
Vvi17g305 322 Gene3D Aspartate Aminotransferase, domain 1 229 322 IPR015422 GO:0003824
Vvi17g305 322 PANTHER CYSTEINE DESULFURASE, MITOCHONDRIAL 179 230 IPR010240 GO:0030170|GO:0031071|GO:0044571
Vvi17g305 322 PANTHER CYSTEINE DESULFURASE, MITOCHONDRIAL 231 308 IPR010240 GO:0030170|GO:0031071|GO:0044571
Vvi17g305 322 PANTHER CYSTEINE DESULFURASE, MITOCHONDRIAL 151 178 IPR010240 GO:0030170|GO:0031071|GO:0044571
Vvi17g305 322 PANTHER CYSTEINE DESULFURASE, MITOCHONDRIAL 43 151 IPR010240 GO:0030170|GO:0031071|GO:0044571
Vvi17g305 322 Gene3D - 179 228 IPR015421 GO:0003824
Vvi17g305 322 Gene3D - 64 151 IPR015421 GO:0003824
Vvi17g305 322 SUPERFAMILY PLP-dependent transferases 51 290 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g305 K04487 iscS, NFS1; cysteine desulfurase [EC:2.8.1.7] - vvi:100249131 565.074
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g305 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007606 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34