Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g307 ATGGGTTTCCTTTCTCTTCTCTGCTCTTGCCTGGAGAGGAGGCTGAAGGGCCGCGGCGGCGCCGGGGATGATGAAGCAGATGCTGCCAGCGACGGCGACAGTTTCGACCTGTTCTTCGACCTCCGCGCTCTCCAGGTCGCCACTAATTTCTTCTCCGAGTTCAATGAGCTCGGGCATGGTGGGTTTGGTCCTGTCTACAAGGGATTGATGCCAAATGGTACACAAATAGCTGTGAAGAAGCTCTCACTGGATTCAAGACAGGGAGTAAGAGAATTCACTAATGAGGTAAAATTGTTATTGAAAATTCAGCACAAGAACTTGGTCACATTGTTGGGCTGTTGTGTAGAAGGACCTGAGAAGATGCTGGTCTATGAGTATCTTCCAAACAAGAGTCTTGACTGCTTCCTTTTTGATAAAACAAAGTCTGCATCCTTGGATTGGGCAACGAGGTTTCGAATAGTTATGGGTGTGGTGAGAGGTCTTCTTTACCTACATGAAGAGGCCCCTGAAAGGATTATTCATCGAGATATTAAAGCTAGTAACATATTGTTGGATGAAAAGTTAAATCCAAAGATCTCAGATTTTGGTTTGGCAAGGCTTTTTCCTGGGGATGAAACACATGTAAATACATTTAGGATTTCGGGTACTCATGGCTATATGGCTCCTGAGTACGCACTACATGGATACTTGTCTGTTAAAACGGATGTATTCAGTTTTGGGGTTTTGGTATTGGAGATTGTGAGCGGGAGAAAGAATCACAATTCACATCTGAGTGCAGAAAAGACGGACCTCTTGAGCTATACATGGAAGCTCTACCAAGGTGGGAAAGCATTAGAATTAGTTGACCCAAGCCTTGCCAAGTGTAATCCTGATGAGGCAGCAATGTGCATTCAGCTGGGATTGTTATGTTGTCAAGCAAGTGTTGCAGATAGACCCGATATGAACTCTGTCCATCTTATGCTATCAAGTGATTCCTTTAATTTGCCAAGACCAGGAAAACCTGGAATTCAAGGCCGAACTGGACGATGGACGACTACCACTTCAGCTTTCACAAATACTAATGCCACTAGTACCAGCACTGGTATTACCAAGGCTTCTGCTGGTAGTAGTTTTGTTGAGGAATACTCCAGAAATTCCATCTCCATTTCTTCTCTAGATGAAGGAAGATGA 1170 44.44 MGFLSLLCSCLERRLKGRGGAGDDEADAASDGDSFDLFFDLRALQVATNFFSEFNELGHGGFGPVYKGLMPNGTQIAVKKLSLDSRQGVREFTNEVKLLLKIQHKNLVTLLGCCVEGPEKMLVYEYLPNKSLDCFLFDKTKSASLDWATRFRIVMGVVRGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGDETHVNTFRISGTHGYMAPEYALHGYLSVKTDVFSFGVLVLEIVSGRKNHNSHLSAEKTDLLSYTWKLYQGGKALELVDPSLAKCNPDEAAMCIQLGLLCCQASVADRPDMNSVHLMLSSDSFNLPRPGKPGIQGRTGRWTTTTSAFTNTNATSTSTGITKASAGSSFVEEYSRNSISISSLDEGR* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3396900 3402903 + Vvi17g307 Vvi17g307 779004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g307 389 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 387 - -
Vvi17g307 389 CDD STKc_IRAK 57 321 - -
Vvi17g307 389 Pfam Protein tyrosine and serine/threonine kinase 55 318 IPR001245 GO:0004672|GO:0006468
Vvi17g307 389 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g307 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Vvi17g307 389 Gene3D Phosphorylase Kinase; domain 1 24 126 - -
Vvi17g307 389 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Vvi17g307 389 SMART serkin_6 51 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g307 389 SUPERFAMILY Protein kinase-like (PK-like) 37 321 IPR011009 -
Vvi17g307 389 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 387 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76313 PF07714 PK_Tyr_Ser-Thr 4.70E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g307 - - vri:117904163 724.546