Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g311 ATGCTCAGATCAATTGTTCCAAAAATAAGCAAGATGGACAGAACATCTATTCTTGGAGATGCCATAGATTATATGAGAGAGCTCCTAGAAAGAATGAATAAGTTGCAAGAAGAACAAATGCAAGCAGGCACAAGCAGAACCAACTCACCAGGCATCTTCAAGGAGCTAAAGCCAAATGGTATGATCACGAAAAATTCTCCAAAGTTTGATGTGGAAAGAAGAAATTTAGATACCCGGATTGAGATTTGCTGTGCAGAAAAACAAGGATTGTTGCTGTCAACTGTGAGCACGCTAAAAGCACTAGGACTTGAGATTCAACAGTGTGTCATAAGTTGCTTCAATGAATTTTCAGTGCAAGCTTCCTGTTCAGATGCAGCAGAGCAGCAAACAATGCTAAATTCTGAAGATATAAAGCAAGCATTATTCAGAAACGCAGGTTATTGA 444 38.96 MLRSIVPKISKMDRTSILGDAIDYMRELLERMNKLQEEQMQAGTSRTNSPGIFKELKPNGMITKNSPKFDVERRNLDTRIEICCAEKQGLLLSTVSTLKALGLEIQQCVISCFNEFSVQASCSDAAEQQTMLNSEDIKQALFRNAGY* 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3428365 3429668 - Vvi17g311 Vvi17g311 779008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g311 147 Gene3D - 1 70 IPR036638 GO:0046983
Vvi17g311 147 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 147 - -
Vvi17g311 147 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 42 IPR036638 GO:0046983
Vvi17g311 147 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 28 IPR011598 GO:0046983
Vvi17g311 147 Coils Coil 18 45 - -
Vvi17g311 147 PANTHER DNA BINDING PROTEIN 1 147 - -
Vvi17g311 147 CDD ACT_UUR-ACR-like 78 119 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g311 - - vvi:100264526 290.041