Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g313 ATGGCGACCACCAAAGTCCAGAGGATTATGACCCAGCCCATTAATCTGATATTCAGGTTTCTTCAAAGCAAAGCTCGAATTCAGATTTGGCTATTTGAGCAGAAAGATTTGAGAATTGAAGGCAGAATCATAGGATTTGACGAGTACATGAATTTGGTTCTGGATGATGCTGAAGAAGTCAATGTCAAGAAAAACACAAAAAAGACTTTAGGAAGGATTCTCCTCAAAGGAGACAACATTACGCTGATGATGAATACGGGAAAATGA 267 38.95 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNTKKTLGRILLKGDNITLMMNTGK* 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3462739 3465475 - Vvi17g313 Vvi17g313 779010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g313 88 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN E 1 87 IPR027078 GO:0000398|GO:0005681
Vvi17g313 88 SMART Sm3 19 85 IPR001163 -
Vvi17g313 88 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN E 1 87 - -
Vvi17g313 88 SUPERFAMILY Sm-like ribonucleoproteins 12 85 IPR010920 -
Vvi17g313 88 Pfam LSM domain 20 83 IPR001163 -
Vvi17g313 88 CDD Sm_E 7 85 IPR027078 GO:0000398|GO:0005681
Vvi17g313 88 Gene3D - 1 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g313 K11097 SNRPE, SME; small nuclear ribonucleoprotein E - vvi:100257667 174.866
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0635 Cone16ag0273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001999 2 3 2 3 2 2 3 2 1 2 2 2 3 2 1 4 2 3 2 2 2 2 2 2 2 0 0 2 2 1 60