Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g314 ATGGCTGATTTCACTGCAGATTTGCAGGGGTTCAAAACCTCTTCATATCCCTTATTTGAAGCTGATCCAAACACGGGACTCATCAGCACCCAGTCCACAGAGCAGAATCAAGGTTTTTTCGACAATCCAAGCTTGAATTTCCAGGCCCTTGAGACCTTCTTCTCACAGCAACCGCCAGAGTTTCCGGGAAACCTGTCAGAAATTTTCCAGCAGAAGGTGGCGGTGCCGATGGCTCAGGCGGAGGTTTCCGCTGGAGATAGTTTATGTGAGAACAAGAAGAGGAAGGCAAGGGTGGATGCATCAGAAAGCAGCTCTGGGAACTCTTCCACTCCGGCTTGTGAGAGTGGGCTTAAGAGGGGGAAAAATAGTTCAGGAAGAGGGAAGAGAGCCATGAAAAGCATTGAGAAGGAAGATGAGAAACCAAGGGAGGTGGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACAGACAGTCACAGCTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAGAGACTCAGATGCTTACAAGACATTGTCCCAGGATGCTACAAGACTATGGGAATGGCAGTCATGTTGGATGAAATCATCAATTATGTCCAATCCTTGCAAAATCAAGTTGAGTTTCTTTCCATGAAGCTTACTGCAGCAAGCCAATATTATGACTTCAACTCAGATACAGATACCTTAGAAACAATTCAGAGGGGAAAGGTACATGGAGAGCAACCTCCTTCAACTCAACATGGTCCCATTGACTTGACTTTTGGCTCTTACTCCTCTTTGCCATACAACACATGA 798 46.12 MADFTADLQGFKTSSYPLFEADPNTGLISTQSTEQNQGFFDNPSLNFQALETFFSQQPPEFPGNLSEIFQQKVAVPMAQAEVSAGDSLCENKKRKARVDASESSSGNSSTPACESGLKRGKNSSGRGKRAMKSIEKEDEKPREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASQYYDFNSDTDTLETIQRGKVHGEQPPSTQHGPIDLTFGSYSSLPYNT* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3477175 3478644 + Vvi17g314 Vvi17g314 779011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g314 265 MobiDBLite consensus disorder prediction 237 265 - -
Vvi17g314 265 MobiDBLite consensus disorder prediction 128 159 - -
Vvi17g314 265 MobiDBLite consensus disorder prediction 90 159 - -
Vvi17g314 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 242 IPR024097 GO:0006355
Vvi17g314 265 Gene3D - 150 223 IPR036638 GO:0046983
Vvi17g314 265 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Vvi17g314 265 PANTHER TRANSCRIPTION FACTOR BEE 1 2 242 - -
Vvi17g314 265 SMART finulus 159 209 IPR011598 GO:0046983
Vvi17g314 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Vvi17g314 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 222 IPR036638 GO:0046983
Vvi17g314 265 MobiDBLite consensus disorder prediction 247 265 - -
Vvi17g314 265 CDD bHLH_AtBPE_like 143 228 - -
Vvi17g314 265 MobiDBLite consensus disorder prediction 101 117 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g875 Vvi17g314 ECH
Vvi1g326 Vvi17g314 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14187 PF00010 HLH 8.80E-05 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g314 - - vvi:100247374 530.791