Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g314 | ATGGCTGATTTCACTGCAGATTTGCAGGGGTTCAAAACCTCTTCATATCCCTTATTTGAAGCTGATCCAAACACGGGACTCATCAGCACCCAGTCCACAGAGCAGAATCAAGGTTTTTTCGACAATCCAAGCTTGAATTTCCAGGCCCTTGAGACCTTCTTCTCACAGCAACCGCCAGAGTTTCCGGGAAACCTGTCAGAAATTTTCCAGCAGAAGGTGGCGGTGCCGATGGCTCAGGCGGAGGTTTCCGCTGGAGATAGTTTATGTGAGAACAAGAAGAGGAAGGCAAGGGTGGATGCATCAGAAAGCAGCTCTGGGAACTCTTCCACTCCGGCTTGTGAGAGTGGGCTTAAGAGGGGGAAAAATAGTTCAGGAAGAGGGAAGAGAGCCATGAAAAGCATTGAGAAGGAAGATGAGAAACCAAGGGAGGTGGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACAGACAGTCACAGCTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAGAGACTCAGATGCTTACAAGACATTGTCCCAGGATGCTACAAGACTATGGGAATGGCAGTCATGTTGGATGAAATCATCAATTATGTCCAATCCTTGCAAAATCAAGTTGAGTTTCTTTCCATGAAGCTTACTGCAGCAAGCCAATATTATGACTTCAACTCAGATACAGATACCTTAGAAACAATTCAGAGGGGAAAGGTACATGGAGAGCAACCTCCTTCAACTCAACATGGTCCCATTGACTTGACTTTTGGCTCTTACTCCTCTTTGCCATACAACACATGA | 798 | 46.12 | MADFTADLQGFKTSSYPLFEADPNTGLISTQSTEQNQGFFDNPSLNFQALETFFSQQPPEFPGNLSEIFQQKVAVPMAQAEVSAGDSLCENKKRKARVDASESSSGNSSTPACESGLKRGKNSSGRGKRAMKSIEKEDEKPREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASQYYDFNSDTDTLETIQRGKVHGEQPPSTQHGPIDLTFGSYSSLPYNT* | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 3477175 | 3478644 | + | Vvi17g314 | Vvi17g314 | 779011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g314 | 265 | MobiDBLite | consensus disorder prediction | 237 | 265 | - | - | |
Vvi17g314 | 265 | MobiDBLite | consensus disorder prediction | 128 | 159 | - | - | |
Vvi17g314 | 265 | MobiDBLite | consensus disorder prediction | 90 | 159 | - | - | |
Vvi17g314 | 265 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 2 | 242 | IPR024097 | GO:0006355 | |
Vvi17g314 | 265 | Gene3D | - | 150 | 223 | IPR036638 | GO:0046983 | |
Vvi17g314 | 265 | Pfam | Helix-loop-helix DNA-binding domain | 157 | 204 | IPR011598 | GO:0046983 | |
Vvi17g314 | 265 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 2 | 242 | - | - | |
Vvi17g314 | 265 | SMART | finulus | 159 | 209 | IPR011598 | GO:0046983 | |
Vvi17g314 | 265 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 203 | IPR011598 | GO:0046983 | |
Vvi17g314 | 265 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 222 | IPR036638 | GO:0046983 | |
Vvi17g314 | 265 | MobiDBLite | consensus disorder prediction | 247 | 265 | - | - | |
Vvi17g314 | 265 | CDD | bHLH_AtBPE_like | 143 | 228 | - | - | |
Vvi17g314 | 265 | MobiDBLite | consensus disorder prediction | 101 | 117 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14187 | PF00010 | HLH | 8.80E-05 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g314 | - | - | vvi:100247374 | 530.791 |