Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g316 ATGGTCGGAAGAAGGAGGAGAGTTTTCAATGTGAGTGAGGCTATAGAATTCTTGAACCAGCTGTTGGTGGACAACCCACTTCTTCCTTTTTTGATTCCGGTGGTTTTGGTTGTCTGGGCTGTAGAGAGATGGATTTTTTCCCTCTCCAACTGGGTTCCACTTGTGGTGGCTGTATGGGCTACAATTCAGTATGGAAGTTATAAAAGACGAATCCTTGTGGAGGACTTGAATAAAAAATGGAAGCAAGTCATAGTAAACAAATCGCCGATAACACCAATAGAGCACTGTGAATGGCTGAACAAACTGTTGATGGAAATTTGGCCCAACTACTTGAACCCAAAGCTTTCATTAAGGTTCTCATCTATTGTTGAGAAACGCTTAAAGCACCGAAAATCAGGGCTCATTGAAAAAATCGAACTACAGGGGTTTTCGCTAGGTTCAAGCCCACCTGTTTTGGGCCTCCATGGGACTCAGTGGTCTGCTACAGGTGATCAGAAAATCATGCGCTTGGGTTTTGACTGGGACACCACCGACTTAAGTATCATGTTGCTTGCTAAATTAGCCAAGCCACTGCTTGGTACTGCTCGGATTGTTATAAATAGCCTCCACATCAAGGGTGATCTCCTCTTGATGCCAATTCTGGATGGAAGAGCATTTCTATACTCATTCATATCACCTCCTGAAGTGAGAATTGGCGTTGCATTTGGAAGTGGTGGCAGCCAATCACTACCTGCAACAGAACTTCCCGGTGTTTCTTCTTGGCTGGTTAAACTTTTTACTGATACCCTAGTTAGGACAATGGTTGAACCTCGCCGCCGTTGTTACTCTCTGCCAGCAGTAGATTTAAGGAAAAAGGCAGTTGGTGGTGTTATTTATGTTACAGTCATCTCAGCAAGTAAACTTTCTAGGAGTAGCCTGAAAGGAAGTCCTCTTAGAAGGCAACAAAGCTGCAGTATAGATGGTATTTCAGAAGAGCACCTTGATGATAAATATTTGCAGACCTTTGTTGAGGTTGAACTTGGAGAGCTGACCAGGAGAACTGATGTGAGAGTTGGCTCCAGCCCCCGATGGGATTCATTATTTAATATGATTTTACATGAGGACACGGGAACTCTCCGATTCCAGCTTTATGAAAGTACACCAAGCAATGTGAAGTATGACTACCTAGCAAGTTGTGAAATTAAGATGAAATATGTTGCCGATGATTCCACAGCATTTTGGGCAATAGGATCTGAATCCAGTGTAATAGCCAAGCATGCCGAGTTCTGTGGAAAAGAAGTTGAAATGGTTGTCCCATTCGAGGGTGCTAATTCAGGAGAGTTGATGGTGAGACTTGTGGTGAAGGAATGGCAGTTTACTGATGGTTCACATAGCTCGAATAATTTCCGTGTTAGCCCTCAACAATCACTCTATGGTTCATCAAATTTTGCCTCAGGAACTGGGAGGAAAATCAATATAACTGTTGTGGAAGGAAAAGATCTTATTGCAAACAAATCTGGAAGGTGTGACCCATATGTGAAGCTGCAGTATGGGAAGGTCCCACAGAGAACAAGGACTGTCCCACATTGTTCAAGTCCTACCTGGAATCAGAAGTTTGAATTTGATGAAATAGGAGGTGGTGAATATCTTAAGATTAAATGCTTTAATGAAGAAACATTTGGAGATGACAACATTGGTAATGCACGAGTAAGTTTGGAGGGACTTGTAGAAGGCTCAATAAGGGATGTGTGGGTCCCCCTTGAGAAAGTAAATACAGGAGAACTAAGGCTCCTATTAGAAGTGGTTGCAAATGCAGGTTCGGGAAATGGTTGGGTTGAACTTGTTCTTGTAGAAGCAAGAGATCTAATTGCTGCGGATCTCAGAGGAACAAGTGATCCATACGTGAGGGTTCAGTATGGAAGCCTAAAGAAAAGAACTAAGGTTATGTTCAAAACTCTGAATCCTCAATGGAACCAGACCTTAGAGTTCCCTGATGATGGTAGCCCCTTGGAATTGCATGTAAAAGACCACAATGCCTTACTACCCACGTCCAGTATAGGTGATTGTGTCGTAGAATATCAGAGATTACCTCCAAACCAGATGGCGGATAAGTGGATACCCCTACAAGGGGTAAAAAGGGGAGAGATTCATGTTCAAATTACAAGAAAAATTCCAGAAATACAGAGGAGACCCAGTCTTGAATCTGAACCATCATCCTTAATTAAAGCACACCAAGTTTCTAGCCAGATGAAACAAATGATGAACAAGTTAGAAACCCAAATCGAGGATGGCAACCTTGAAGGACTTTCAGCAGTAGTAAGTGAGCTGGAGAGCCTGCAGGATACGCAGGAAGAGTACATGGTTCAACTCGAGACGGAGCAAATGCTGCTGCTCAATAAGATAACAGAGCTCGGTCAGGAATTTTTTAACTCACCACCCTCCCTCAGAAGAAGATCTTCCCATGACTGA 2448 43.01 MVGRRRRVFNVSEAIEFLNQLLVDNPLLPFLIPVVLVVWAVERWIFSLSNWVPLVVAVWATIQYGSYKRRILVEDLNKKWKQVIVNKSPITPIEHCEWLNKLLMEIWPNYLNPKLSLRFSSIVEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSIMLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKLSRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLFNMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAEFCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTGRKINITVVEGKDLIANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGGEYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVVANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLNPQWNQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKIPEIQRRPSLESEPSSLIKAHQVSSQMKQMMNKLETQIEDGNLEGLSAVVSELESLQDTQEEYMVQLETEQMLLLNKITELGQEFFNSPPSLRRRSSHD* 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3517940 3530407 + Vvi17g316 Vvi17g316 779013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g316 815 ProSiteProfiles C2 domain profile. 584 699 IPR000008 -
Vvi17g316 815 PANTHER PLANT SYNAPTOTAGMIN 14 809 - -
Vvi17g316 815 Gene3D C2 domain 598 716 IPR035892 -
Vvi17g316 815 Gene3D C2 domain 473 597 IPR035892 -
Vvi17g316 815 CDD C2 605 701 - -
Vvi17g316 815 SMART C2_3c 604 698 IPR000008 -
Vvi17g316 815 SMART C2_3c 483 577 IPR000008 -
Vvi17g316 815 SMART C2_3c 290 408 IPR000008 -
Vvi17g316 815 Gene3D C2 domain 288 443 IPR035892 -
Vvi17g316 815 Pfam C2 domain 483 580 IPR000008 -
Vvi17g316 815 Pfam C2 domain 291 398 IPR000008 -
Vvi17g316 815 Pfam C2 domain 606 701 IPR000008 -
Vvi17g316 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 601 714 IPR035892 -
Vvi17g316 815 PANTHER OS01G0128800 PROTEIN 14 809 - -
Vvi17g316 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 595 IPR035892 -
Vvi17g316 815 ProSiteProfiles C2 domain profile. 465 578 IPR000008 -
Vvi17g316 815 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 92 278 IPR031468 GO:0008289
Vvi17g316 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 403 IPR035892 -
Vvi17g316 815 CDD C2 291 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g316 - - - vvi:100262742 1624.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g879 Vvi17g316 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56