Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g317 ATGGCCTTCGCAACTGCAAAATTAACGGAGTTTCCTTTCACCTCTCACTCATCCTCTCTCCACTTCCTCTTCCCTAAAACCCCCCTATCTCTCCTTAAACCCTTCTCTTCGCTCCGGACCACTGACTCCAACAACCTCAGAAACCGTAAAACTAAACGATCCCTTTATCCTTGGGACCATCAAAACTCTCGAAAAAGCTCTAACACTAATCCTAATTCTAGTACCAAATCTTGGATTAACAAATGGCCTTCTCCCAATCCTTCGATTGAGTCAGAACACAAAGGCATTGATTCTAAGGGTAGGGATGGGACGGAGAGTCGGTATTTCGATGGGCGGAGCGGGACTAGTGCGATAGAGAGGATTGTGCTCCGGTTGCGGAATCTAGGGTTGGGTTCGGATGATGAGGATAAGAATGAGGGGGAAGTGGAGAGTGGTGATACAATGCCAGTGACCGGGGACGAGAAATTGGGGGATTTGTTGCAACGGGATTGGGTGCGACCCGATAGTATGTTGATTGAGGATGAGGATGAGGATGACATGATTTTGCCATGGGAGAGGGGAGAGGAGCGGCAAGAAGAGGAGGGAGATGGGAGATTGAAGAGGAGGGCAGTCAGGGCGCCAACGTTGGCGGAGCTGACAATTGAGGACGAGGAGCTGAGGAGATTAAGGCGGCTCGGGATGACAATAAGAGAGAGGATTAATGTGCCCAAGGCAGGCATTACACAAGCGGTTTTGGGGAAGATTCATGAGAAGTGGAGGAAGGAAGAGTTGGTGCGGCTTAAATTTCATGAGGCTCTTGCGCATGATATGAAGACAGCCCATGAGATAGTCGAGCGTCGTACTGGAGGATTAGTTACATGGAGGTCAGGAAGTGTTATGGTAGTGTTTCGGGGAACCAACTATGAAGGTCCTCCTAAACCCCAGCCTGTTGATGGAGAAGGTGATTCTCTTTTTGTGCCAGACGTTTCTTCTGTTGACAATCCGGCAATGAGGAATGATAACAATGGTGGTCCTACTTTAGAAAAGGGCTCTTTGCCTGTCAGGAATCCAGTCCATGCTGAGAACATGACAGAAGAGGAAGCTGAATATAACAGCCTATTAGATGGTTTGGGTCCTCGTTTTGTTGATTGGTGGGGTACAGGAGTATTGCCTGTTGATGGTGATTTACTCCCACAAAGTATCCCTGGCTACAAAACACCGTTAAGAATTCTTCCAACAGGAATGCGGCCACGGCTGACCAACGCAGAGATGACTAATTTACGGAAGCTAGCGAAATCACTTCCTTGTCATTTTGCTCTTGGGAGAAATAGAAACCACCAAGGGTTGGCTGCTGCTATTATAAAGCTTTGGGAGAAAAGCATAGTTGTGAAAATTGCTGTCAAACCAGGAATCCAGAATACAAACAATAAGTTAATGGCTGAGGAAATAAAGAACCTAACAGGAGGAGTGTTACTGCTTAGAAACAAATATTACATTGTCATATATCGTGGAAAGGATTTCCTTCCAACAAGTGTTGCTGCTGCTCTGTCAGAAAGAGAGGAATTGACTAAACATATTCAAGTTGTTGAAGAGAAAGTGCGGACTGGAGGAGCAGAGGCAATTCCATCTGGTGAAGATGGAGTCGGACAGCCTCTTGCAGGTACATTAGCAGAGTTTTATGAGGCTCAAGCTCGATGGGGAAGAGAAATATCTGCAGAAGAACATGAGAAGATGATAGAAGAAGCTTCTAGAGCTAAGAGTGCAAGGGTAGTAAAGCGTATTGAGCATAAACTAGCCCTTGCCCAAGCCAAAAAGCTAAGAGCAGAGAGACTATTAGCTAAGATAGAAGCATCCATGATTCCTGCTGGTCCTTCTGATGACCAGGAAACAATAACTGATGAGGAGCGGTTTATGTTTCGCAGGCTTGGTTTAAGAATGAAGGCATACTTGCTTCTTGGTGTTCGTGGTGTTTTTGATGGTGTTATTGAGAATATGCATTTACATTGGAAGCATAGAGAACTTGTGAAGCTAATCTCCAAACAAAAGACCCTCGCATTTGTTGAAGACACAGCAAGATTATTGGAATATGAGAGTGGTGGGATACTAGTGGCAATAGAAAGAGTTCCAAAAGGTTATGCCCTTATTTATTATCGTGGAAAGAATTATCGACGACCTGTTAGCCTGAGGCCAAGAAACCTTCTAACCAAGGCAAAAGCATTAAAGCGATCAGTGGCCATGCAGCGCCATGAGGCTCTCAGTCAGCACATATCTGAACTGGAGAGAACCATAGAGCAAATGAAAATGGAAATAGGAGATTCTAAAGATGCAGAGGATAAGGATTCCTGGAGCACAGAAGGCCATGGCCAGTTCGATCAAGTTTCAGAGAGTGAAGATGAAGCTTCAGGCATGGATTCTGATGCTGATGATGTTGAAGACATTGACTGGAAGGATGATGAAGAGTCCGGCATTTCACGCTTCAAGAATCATGATGATCTTTCCAGCATAAAGTTTTAA 2493 45.21 MAFATAKLTEFPFTSHSSSLHFLFPKTPLSLLKPFSSLRTTDSNNLRNRKTKRSLYPWDHQNSRKSSNTNPNSSTKSWINKWPSPNPSIESEHKGIDSKGRDGTESRYFDGRSGTSAIERIVLRLRNLGLGSDDEDKNEGEVESGDTMPVTGDEKLGDLLQRDWVRPDSMLIEDEDEDDMILPWERGEERQEEEGDGRLKRRAVRAPTLAELTIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFRGTNYEGPPKPQPVDGEGDSLFVPDVSSVDNPAMRNDNNGGPTLEKGSLPVRNPVHAENMTEEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDAEDKDSWSTEGHGQFDQVSESEDEASGMDSDADDVEDIDWKDDEESGISRFKNHDDLSSIKF* 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3531078 3538891 + Vvi17g317 Vvi17g317 779014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g317 830 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 822 - -
Vvi17g317 830 SUPERFAMILY YhbY-like 213 307 IPR035920 -
Vvi17g317 830 Pfam CRS1 / YhbY (CRM) domain 412 496 IPR001890 GO:0003723
Vvi17g317 830 Pfam CRS1 / YhbY (CRM) domain 215 297 IPR001890 GO:0003723
Vvi17g317 830 Pfam CRS1 / YhbY (CRM) domain 625 710 IPR001890 GO:0003723
Vvi17g317 830 MobiDBLite consensus disorder prediction 45 59 - -
Vvi17g317 830 MobiDBLite consensus disorder prediction 92 108 - -
Vvi17g317 830 MobiDBLite consensus disorder prediction 764 830 - -
Vvi17g317 830 MobiDBLite consensus disorder prediction 40 111 - -
Vvi17g317 830 MobiDBLite consensus disorder prediction 764 778 - -
Vvi17g317 830 ProSiteProfiles CRM domain profile. 212 308 IPR001890 GO:0003723
Vvi17g317 830 MobiDBLite consensus disorder prediction 790 810 - -
Vvi17g317 830 Coils Coil 584 611 - -
Vvi17g317 830 Coils Coil 505 525 - -
Vvi17g317 830 ProSiteProfiles CRM domain profile. 410 507 IPR001890 GO:0003723
Vvi17g317 830 ProSiteProfiles CRM domain profile. 622 722 IPR001890 GO:0003723
Vvi17g317 830 MobiDBLite consensus disorder prediction 328 347 - -
Vvi17g317 830 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 822 IPR045278 GO:0000375|GO:0003729
Vvi17g317 830 MobiDBLite consensus disorder prediction 60 87 - -
Vvi17g317 830 SMART CRS1_YhbY_2 412 496 IPR001890 GO:0003723
Vvi17g317 830 SMART CRS1_YhbY_2 624 711 IPR001890 GO:0003723
Vvi17g317 830 SMART CRS1_YhbY_2 214 297 IPR001890 GO:0003723
Vvi17g317 830 Coils Coil 742 769 - -
Vvi17g317 830 MobiDBLite consensus disorder prediction 811 830 - -
Vvi17g317 830 Gene3D - 411 505 IPR035920 -
Vvi17g317 830 Gene3D - 212 308 IPR035920 -
Vvi17g317 830 Gene3D - 623 726 IPR035920 -
Vvi17g317 830 SUPERFAMILY YhbY-like 623 720 IPR035920 -
Vvi17g317 830 SUPERFAMILY YhbY-like 412 503 IPR035920 -
Vvi17g317 830 MobiDBLite consensus disorder prediction 130 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g317 - - - vvi:104882345 1574.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32