Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g318 ATGGCAACAGCTCCCGCAATTTCAACTAGGAGTTTGCCGTCATTTGAAGGGCTTCGACCTTCAACAGTCAGAGTGCCTTTGGTTCGTCTGCCACTAAGAGCAGCGGGTCTCACACAGAGGCCGGTCAGGGGTCTGGTTGTCAGAGCTGCCACTTCAATTGGCCCCAAGTATACTTCCTTGAAGCCCTTGGCTGATAGAGTGCTGGTGAAGATTAAAACTGTGGAGGAGAAGACCGGAGGTGGTATTTTACTTCCAACAACAGCTCAAACAAAACCTCAAGGAGGGGAGGTTGTTGCTGTTGGAGAGGGCAGGACAGTTGGGAAGAACAAAGTAGACATTGGTGTAAAGACCGGTACCTCGGTAGTGTATTCCAAGTATGCCGGGACTGAGTTGGAGTTCAATGGATCAAATCATCTTATATTGAAGGAAGATGATATAGTCGGTATTCTTGAGACAGACGATATCAAGGATCTGAAGCCCTTGAATGATAGAGTCTTAATCAAGGTTGCTGTGGCCGAAGAAAAGACTGCTGGAGGCTTGTTGCTTACTGAGGCAACAAAGGAGAAACCTTCCATTGGCACTGTGATTGCAGTTGGACCTGGGTCTCTGGATGGGGAGGGTAATAGGAAACCACTGTCATTAAGCCCAGGCAGCACAATTATGTACTCCAAGTATGCAGGAAATGAGTTCAAGGGCAGTGATGGTTCTGATTACATAGCTTTACGGGCGTCTGATGTGATGGCTGTGCTTTCCTAG 756 47.88 MATAPAISTRSLPSFEGLRPSTVRVPLVRLPLRAAGLTQRPVRGLVVRAATSIGPKYTSLKPLADRVLVKIKTVEEKTGGGILLPTTAQTKPQGGEVVAVGEGRTVGKNKVDIGVKTGTSVVYSKYAGTELEFNGSNHLILKEDDIVGILETDDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTEATKEKPSIGTVIAVGPGSLDGEGNRKPLSLSPGSTIMYSKYAGNEFKGSDGSDYIALRASDVMAVLS* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3540736 3546974 - Vvi17g318 Vvi17g318 779015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g318 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vvi17g318 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Vvi17g318 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Vvi17g318 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Vvi17g318 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Vvi17g318 251 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC-LIKE 6 250 - -
Vvi17g318 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Vvi17g318 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 6 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi17g318 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g318 K04078 - vvi:100267892 483.796