Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g32 ATGGTTAAGGACCAAAAGGAGGAGCCTGCAATTATCACCAACACCACACCCCACCAGGAAGAGAAGGACCCCGAGTTCGGATCTGAGGACTTGCTTGAGTCCCCATTGCCCCTCACCGTCACTTCTCGGGTGTTGTATATGTTAGGAGACATAGCGGCAGGTCCGGCTTATCGGTTCACACAATGGCTGGAACTGGTTCGTAAGCGCAGTGGCAAATATCGCTCCTCTGGTTTCCCTAACCGCCCGCCCAGAATCGATACTATGCCATTCTGTTCAGGAGAATCAACTGTTGATTCCAGAAGTTCTTTGCCTGTTGAGCAAGCTACAGAAATAAGTTTGTGGGAAAGACTTGGTAAAGCTGCTATGATGGATATTGAATCATGTTCTTTTTCTTGGGACATGCTTTCCTCACTTCACCATACTGAACATAGTAGTAGCAATGATCATTCTGAGGATGAAATGAGTAAAGCTCTTGAGGTCACCGTGAATTCTGGAGGGGTTGTCTTCTTTGCTCTATTCAACTGGCCTGAGAATGATGATTATTTCCTGAAGGAGGGAGCAGCAGTTATAAAGTTTTCATCTTCAAGAGTGGCCACACAATCAGAACGTCTTGGTTACGAATTCGCAAAGTGGCTAGGAGTTCGAACTCCACAGGCTAGAGTCATTCACAATTCTAGTACGGAGTGGCTTCAGATTAAGGAAGCTGCAGAAAAAGCAAGAGATGCAGCAATTTCAGAAGGAGATGAAGTTGGTGAAGTCACATGTTCAGAGCTTTTAGAAGCTCTTGAACTTAGCCGATGCCTCTTTCTGATGAATTATGTACATGGATCTCCTCTCTTGGAAAGCTCAAGTGCATTTGACTCACGAGAAGCTGCAGAAAAGACAGCAGCAGCCCTTGGCAGGGTCTTGATGTTGGACCTTGTCATTAGAAATGAAGATAGACTTCCTTGTCGTCAGCTCAGATGGCGTGGAAATCCCGCAAATCTATTGTTGGCCGACAAAATGGCCTCTACTGACATGGATGCATTGGAGGAAGCATTTGATTCTGCAATCAAGCGATATAGGCCTAGGGTAATTAGGGCTCTTCAGAAAGAAAGAAGGGCGACATCAGTTGACAGCAGATTGAGCCCTCATAATTCAGGATTGGTATCACAGACTTTGAATCAGTCAGGTCTTTCAGATTTTCATATTGTGGCAATCGACTCTGGAGTTCCTCGCAGACCACCAGCAGGAAAACGTGCAAATGACCAGGCAAATTATCCAAAACTGGTTGAGCTCATGCTCAACAGCTCCAAGTATTCCTTGAATCTATTACATGAGATAACAGGAGGGAAGTTAGGATTTGCTTCAGATGATACTGAAACAGCAACTGATATACTTTTGACTGAGATGGCTTCAGTTGTTCATGAATTTCGTCGTGGGTTTCGAGCTGCACTAAGAGACTTGCAGGGTTTCCATATATTCCTACTCACACTCCACCAAAAACTGGATGGCCTCTTACGAGTATTTCTGAATATTGTAAATAGAAATTCCTGTGTTGATTTTGACAGAGAGGATTTGGGGGCCTCTGAGGCACAGTTATCATCTTCTGGAGTTAGAGAAAGCTCAGACTCTAGTTCTCCCATCTCTCGAGAAGCTTGGCATGGGAAGTTCAGCAGAGGGAGTGTGGAGTCACTCCGAAGCCTGCGATTGACAACGAAGCTCCGTGACTTTCACAGATTTGCCAAGGTTGATGCAGAATCAAGCAAAGAGTTGGAACAATGGAATGAAATGCTAAGAAATGATGCAGTTAAATTATGCCAAGAGAACAATTTCAATTCAGGTTTCTTCGAGGGTAATGATAATAATGGTGTTGTTGATGCTTATGAGTTGAAGGTCAGGCTTGAGCACATTCTTGAGAGGATAGCATTGATATCTGATGCTGCAAATACAGAGCGACCATCTTCAATTACAGCGAGTCTCTTCATTGGTGGGGCCCTTGCTGCAAGATCTGTGTACACACTACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTATTTCTGACAGTGAAGACACAAACATCAGCAGCATATTTGAAGAAGCTTCTGTGTTCATTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAGAACTTCACTCTATTAGAAGCATGGAATGCCCTAAAACGAGTACACCGCCGAGCGCAGCCCAATGATGGGTTTGCCAGGACCCTCCTGGACCTGGACCGCAAACTGCATGGAAAGGTTTCAATGGAGTGGCATCAGCGAAAACCGCCAATGAAAGTTTGCCCCATCTGTGGGAAAAATGCTGGCTTGAGCAGCAGCTCGCTTAAGCTTCATTTGCAGAAATCACACAAGAAGCTATCATCAGGGAGCGTGGACAGTGCTATGACTATGGAGATCCAAAAGGCTATAAGTGCTCTCAAGATTAGCCGAGGTGGGAGTGTCAGCCCTACACAGAGGCAGTCTAATTCAGTCATGGATGAATAG 2622 44.7 MVKDQKEEPAIITNTTPHQEEKDPEFGSEDLLESPLPLTVTSRVLYMLGDIAAGPAYRFTQWLELVRKRSGKYRSSGFPNRPPRIDTMPFCSGESTVDSRSSLPVEQATEISLWERLGKAAMMDIESCSFSWDMLSSLHHTEHSSSNDHSEDEMSKALEVTVNSGGVVFFALFNWPENDDYFLKEGAAVIKFSSSRVATQSERLGYEFAKWLGVRTPQARVIHNSSTEWLQIKEAAEKARDAAISEGDEVGEVTCSELLEALELSRCLFLMNYVHGSPLLESSSAFDSREAAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMASTDMDALEEAFDSAIKRYRPRVIRALQKERRATSVDSRLSPHNSGLVSQTLNQSGLSDFHIVAIDSGVPRRPPAGKRANDQANYPKLVELMLNSSKYSLNLLHEITGGKLGFASDDTETATDILLTEMASVVHEFRRGFRAALRDLQGFHIFLLTLHQKLDGLLRVFLNIVNRNSCVDFDREDLGASEAQLSSSGVRESSDSSSPISREAWHGKFSRGSVESLRSLRLTTKLRDFHRFAKVDAESSKELEQWNEMLRNDAVKLCQENNFNSGFFEGNDNNGVVDAYELKVRLEHILERIALISDAANTERPSSITASLFIGGALAARSVYTLQHLGITHILCLCSNEIGQSDSQYPDLFEYKNFSISDSEDTNISSIFEEASVFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLEAWNALKRVHRRAQPNDGFARTLLDLDRKLHGKVSMEWHQRKPPMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKAISALKISRGGSVSPTQRQSNSVMDE* 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 249999 257710 - Vvi17g32 Vvi17g32 778729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g32 873 Pfam Dual specificity phosphatase, catalytic domain 659 786 IPR000340 GO:0008138|GO:0016311
Vvi17g32 873 ProSitePatterns Tyrosine specific protein phosphatases active site. 733 743 IPR016130 GO:0016311|GO:0016791
Vvi17g32 873 SUPERFAMILY Protein kinase-like (PK-like) 61 417 IPR011009 -
Vvi17g32 873 MobiDBLite consensus disorder prediction 526 545 - -
Vvi17g32 873 Gene3D Protein tyrosine phosphatase superfamily 629 801 IPR029021 -
Vvi17g32 873 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 526 872 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vvi17g32 873 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 22 519 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vvi17g32 873 ProSiteProfiles Dual specificity protein phosphatase domain profile. 646 791 IPR020422 GO:0006470|GO:0008138
Vvi17g32 873 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 647 791 IPR029021 -
Vvi17g32 873 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 526 872 - -
Vvi17g32 873 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 22 519 - -
Vvi17g32 873 CDD DSP 647 784 - -
Vvi17g32 873 MobiDBLite consensus disorder prediction 1 32 - -
Vvi17g32 873 SMART dsp_5 646 788 IPR020422 GO:0006470|GO:0008138
Vvi17g32 873 Pfam Actin-fragmin kinase, catalytic 110 388 IPR015275 -
Vvi17g32 873 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 711 767 IPR000387 GO:0016311|GO:0016791
Vvi17g32 873 Gene3D - 279 506 IPR036940 GO:0016301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g32 K14165 - vvi:100242176 1620.91