Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g32 | ATGGTTAAGGACCAAAAGGAGGAGCCTGCAATTATCACCAACACCACACCCCACCAGGAAGAGAAGGACCCCGAGTTCGGATCTGAGGACTTGCTTGAGTCCCCATTGCCCCTCACCGTCACTTCTCGGGTGTTGTATATGTTAGGAGACATAGCGGCAGGTCCGGCTTATCGGTTCACACAATGGCTGGAACTGGTTCGTAAGCGCAGTGGCAAATATCGCTCCTCTGGTTTCCCTAACCGCCCGCCCAGAATCGATACTATGCCATTCTGTTCAGGAGAATCAACTGTTGATTCCAGAAGTTCTTTGCCTGTTGAGCAAGCTACAGAAATAAGTTTGTGGGAAAGACTTGGTAAAGCTGCTATGATGGATATTGAATCATGTTCTTTTTCTTGGGACATGCTTTCCTCACTTCACCATACTGAACATAGTAGTAGCAATGATCATTCTGAGGATGAAATGAGTAAAGCTCTTGAGGTCACCGTGAATTCTGGAGGGGTTGTCTTCTTTGCTCTATTCAACTGGCCTGAGAATGATGATTATTTCCTGAAGGAGGGAGCAGCAGTTATAAAGTTTTCATCTTCAAGAGTGGCCACACAATCAGAACGTCTTGGTTACGAATTCGCAAAGTGGCTAGGAGTTCGAACTCCACAGGCTAGAGTCATTCACAATTCTAGTACGGAGTGGCTTCAGATTAAGGAAGCTGCAGAAAAAGCAAGAGATGCAGCAATTTCAGAAGGAGATGAAGTTGGTGAAGTCACATGTTCAGAGCTTTTAGAAGCTCTTGAACTTAGCCGATGCCTCTTTCTGATGAATTATGTACATGGATCTCCTCTCTTGGAAAGCTCAAGTGCATTTGACTCACGAGAAGCTGCAGAAAAGACAGCAGCAGCCCTTGGCAGGGTCTTGATGTTGGACCTTGTCATTAGAAATGAAGATAGACTTCCTTGTCGTCAGCTCAGATGGCGTGGAAATCCCGCAAATCTATTGTTGGCCGACAAAATGGCCTCTACTGACATGGATGCATTGGAGGAAGCATTTGATTCTGCAATCAAGCGATATAGGCCTAGGGTAATTAGGGCTCTTCAGAAAGAAAGAAGGGCGACATCAGTTGACAGCAGATTGAGCCCTCATAATTCAGGATTGGTATCACAGACTTTGAATCAGTCAGGTCTTTCAGATTTTCATATTGTGGCAATCGACTCTGGAGTTCCTCGCAGACCACCAGCAGGAAAACGTGCAAATGACCAGGCAAATTATCCAAAACTGGTTGAGCTCATGCTCAACAGCTCCAAGTATTCCTTGAATCTATTACATGAGATAACAGGAGGGAAGTTAGGATTTGCTTCAGATGATACTGAAACAGCAACTGATATACTTTTGACTGAGATGGCTTCAGTTGTTCATGAATTTCGTCGTGGGTTTCGAGCTGCACTAAGAGACTTGCAGGGTTTCCATATATTCCTACTCACACTCCACCAAAAACTGGATGGCCTCTTACGAGTATTTCTGAATATTGTAAATAGAAATTCCTGTGTTGATTTTGACAGAGAGGATTTGGGGGCCTCTGAGGCACAGTTATCATCTTCTGGAGTTAGAGAAAGCTCAGACTCTAGTTCTCCCATCTCTCGAGAAGCTTGGCATGGGAAGTTCAGCAGAGGGAGTGTGGAGTCACTCCGAAGCCTGCGATTGACAACGAAGCTCCGTGACTTTCACAGATTTGCCAAGGTTGATGCAGAATCAAGCAAAGAGTTGGAACAATGGAATGAAATGCTAAGAAATGATGCAGTTAAATTATGCCAAGAGAACAATTTCAATTCAGGTTTCTTCGAGGGTAATGATAATAATGGTGTTGTTGATGCTTATGAGTTGAAGGTCAGGCTTGAGCACATTCTTGAGAGGATAGCATTGATATCTGATGCTGCAAATACAGAGCGACCATCTTCAATTACAGCGAGTCTCTTCATTGGTGGGGCCCTTGCTGCAAGATCTGTGTACACACTACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTATTTCTGACAGTGAAGACACAAACATCAGCAGCATATTTGAAGAAGCTTCTGTGTTCATTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAGAACTTCACTCTATTAGAAGCATGGAATGCCCTAAAACGAGTACACCGCCGAGCGCAGCCCAATGATGGGTTTGCCAGGACCCTCCTGGACCTGGACCGCAAACTGCATGGAAAGGTTTCAATGGAGTGGCATCAGCGAAAACCGCCAATGAAAGTTTGCCCCATCTGTGGGAAAAATGCTGGCTTGAGCAGCAGCTCGCTTAAGCTTCATTTGCAGAAATCACACAAGAAGCTATCATCAGGGAGCGTGGACAGTGCTATGACTATGGAGATCCAAAAGGCTATAAGTGCTCTCAAGATTAGCCGAGGTGGGAGTGTCAGCCCTACACAGAGGCAGTCTAATTCAGTCATGGATGAATAG | 2622 | 44.7 | MVKDQKEEPAIITNTTPHQEEKDPEFGSEDLLESPLPLTVTSRVLYMLGDIAAGPAYRFTQWLELVRKRSGKYRSSGFPNRPPRIDTMPFCSGESTVDSRSSLPVEQATEISLWERLGKAAMMDIESCSFSWDMLSSLHHTEHSSSNDHSEDEMSKALEVTVNSGGVVFFALFNWPENDDYFLKEGAAVIKFSSSRVATQSERLGYEFAKWLGVRTPQARVIHNSSTEWLQIKEAAEKARDAAISEGDEVGEVTCSELLEALELSRCLFLMNYVHGSPLLESSSAFDSREAAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMASTDMDALEEAFDSAIKRYRPRVIRALQKERRATSVDSRLSPHNSGLVSQTLNQSGLSDFHIVAIDSGVPRRPPAGKRANDQANYPKLVELMLNSSKYSLNLLHEITGGKLGFASDDTETATDILLTEMASVVHEFRRGFRAALRDLQGFHIFLLTLHQKLDGLLRVFLNIVNRNSCVDFDREDLGASEAQLSSSGVRESSDSSSPISREAWHGKFSRGSVESLRSLRLTTKLRDFHRFAKVDAESSKELEQWNEMLRNDAVKLCQENNFNSGFFEGNDNNGVVDAYELKVRLEHILERIALISDAANTERPSSITASLFIGGALAARSVYTLQHLGITHILCLCSNEIGQSDSQYPDLFEYKNFSISDSEDTNISSIFEEASVFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLEAWNALKRVHRRAQPNDGFARTLLDLDRKLHGKVSMEWHQRKPPMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKAISALKISRGGSVSPTQRQSNSVMDE* | 874 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 249999 | 257710 | - | Vvi17g32 | Vvi17g32 | 778729 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g32 | 873 | Pfam | Dual specificity phosphatase, catalytic domain | 659 | 786 | IPR000340 | GO:0008138|GO:0016311 | |
Vvi17g32 | 873 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 733 | 743 | IPR016130 | GO:0016311|GO:0016791 | |
Vvi17g32 | 873 | SUPERFAMILY | Protein kinase-like (PK-like) | 61 | 417 | IPR011009 | - | |
Vvi17g32 | 873 | MobiDBLite | consensus disorder prediction | 526 | 545 | - | - | |
Vvi17g32 | 873 | Gene3D | Protein tyrosine phosphatase superfamily | 629 | 801 | IPR029021 | - | |
Vvi17g32 | 873 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 | 526 | 872 | IPR035010 | GO:0004721|GO:0009737|GO:0043622 | |
Vvi17g32 | 873 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 | 22 | 519 | IPR035010 | GO:0004721|GO:0009737|GO:0043622 | |
Vvi17g32 | 873 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 646 | 791 | IPR020422 | GO:0006470|GO:0008138 | |
Vvi17g32 | 873 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 647 | 791 | IPR029021 | - | |
Vvi17g32 | 873 | PANTHER | DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN | 526 | 872 | - | - | |
Vvi17g32 | 873 | PANTHER | DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN | 22 | 519 | - | - | |
Vvi17g32 | 873 | CDD | DSP | 647 | 784 | - | - | |
Vvi17g32 | 873 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Vvi17g32 | 873 | SMART | dsp_5 | 646 | 788 | IPR020422 | GO:0006470|GO:0008138 | |
Vvi17g32 | 873 | Pfam | Actin-fragmin kinase, catalytic | 110 | 388 | IPR015275 | - | |
Vvi17g32 | 873 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 711 | 767 | IPR000387 | GO:0016311|GO:0016791 | |
Vvi17g32 | 873 | Gene3D | - | 279 | 506 | IPR036940 | GO:0016301 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g32 | K14165 | - | vvi:100242176 | 1620.91 |