Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g320 ATGTCGGACAAGCCGATTGCCGCCGATGCTCTGCCGTCGAACTCCGACGAATTCCCCCAGATGTCCAGGTCTGAACTCTACGATATGATGTATCAGATGAAGCTGCTTACCGATGAGAATCCGCAACAAGCACGCCAGATTCTGGCTGAGAATCCTCGATTGGCCCGATTTGTCTTTCAGGCTCAAATAATGCTTGGAATGATGGGGACCCCTCGAGAGACTCCAAGTACTCAGTCATCAGTATCACAGCATACTCAGCAGCCAATCGCTCTGGCCACGCAACAGATGTCAGGAACAAGTGGATCTCAAAACCAAGTTCCTGTAACAAAGCAAATGGAAAACCCAATGCAGATTGCATCTGCAGCAGCCCAGATGGCCCCCTCTCAAATTCCTAATTTGCTTTCCCATCCAATTAGTTCTGCTTCTCAGCCACCATTAGCTCGACCTCAGATGCCTACAGTCTCCAGCCAATTGCAACAACCAGGACAGACACCTATCCTTCCACATATGCCGCTGCAACCACCATTGCCTCCACATCCTAGACTTCCATCAATGCCAGCTTTCCAACACCAGCACCCGTCACAAATGGGCTCCAGTATGGGATTCCAACAACCTGGTGGTCAGCTGCATCATTCTCAGCCTGTGTTTCATTCAGGTACCCAACCTAATGCTAGCATTGGGCCTTCCTTTACACAGGCACAGCCGCCACTTCCAAGTCAGCTGCCATCGCAATCTTTTAATCAGATTGGAGGTTCACATTTAAGGACAGAGTTCAGTAATCCTGCTGGAAGCTCCATGCAAGCGGACAGGGGATCTTCTGCCTGGATGCCTCCCCGTCATGAGAGTACAATGGGAACACAGATCCCAGGACCTCCACCATTAGTTCCTGGGTTTGGCCCTAGCAACCCACCTCCACGCCCCCCAATGTTAAACCCCGAGATGGAGAAGGCTTTGCTTCAGCAGGTAATGAGCCTAACCCCAGAGCAGATTAATTGCCTGCCTCCGGAGCAAAGGCATCAGATTCTTCAGTTGCAACAGATGTTGCGGCAATGA 1053 50.9 MSDKPIAADALPSNSDEFPQMSRSELYDMMYQMKLLTDENPQQARQILAENPRLARFVFQAQIMLGMMGTPRETPSTQSSVSQHTQQPIALATQQMSGTSGSQNQVPVTKQMENPMQIASAAAQMAPSQIPNLLSHPISSASQPPLARPQMPTVSSQLQQPGQTPILPHMPLQPPLPPHPRLPSMPAFQHQHPSQMGSSMGFQQPGGQLHHSQPVFHSGTQPNASIGPSFTQAQPPLPSQLPSQSFNQIGGSHLRTEFSNPAGSSMQADRGSSAWMPPRHESTMGTQIPGPPPLVPGFGPSNPPPRPPMLNPEMEKALLQQVMSLTPEQINCLPPEQRHQILQLQQMLRQ* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3562313 3570422 + Vvi17g320 Vvi17g320 779017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g320 350 Pfam Hinge domain of cleavage stimulation factor subunit 2 20 67 IPR025742 -
Vvi17g320 350 MobiDBLite consensus disorder prediction 188 271 - -
Vvi17g320 350 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g320 350 MobiDBLite consensus disorder prediction 132 275 - -
Vvi17g320 350 Pfam Transcription termination and cleavage factor C-terminal 316 350 IPR026896 GO:0031124
Vvi17g320 350 MobiDBLite consensus disorder prediction 167 184 - -
Vvi17g320 350 MobiDBLite consensus disorder prediction 132 166 - -
Vvi17g320 350 Gene3D - 311 350 IPR038192 -
Vvi17g320 350 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 120 350 - -
Vvi17g320 350 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g320 - - - vvi:100261251 577.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g320 . . . Bda15g00516 Bpe12g00691 . . . Cmo13g01066 Cmo18g00034 . . . . . Cpe20g00120 . . . . . . . . . . . . . . . . . . . Lsi02g00180 Csa01g00663 Chy12g01440 Cme12g01878 . . . . . . . Bma08g00062 Sed08g2180 . . Cma13g01025 Cma18g00041 Car13g00860 Car18g00035 Cpe09g01139 . Bhi08g01231 Tan05g2270 Cmetu12g1774 Lac10g0235 Hepe07g2394 . . Cla04g01094 Cam04g1145 Cec01g1655 Cco01g1704 Clacu04g1173 Cmu04g1154 Cre01g1449 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005289 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 39