Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g324 ATGGTGGCCCCCTTCACCGGACTCAAATCTTTGTCGACTTTCCCTGGCACCCGAAAAGCCAACACCGACATCACCTCCGTCGCTAGCAATGGTGGCCGAGTTCGCTGCATGAAGGTTTGGCCTACAGAAGGGTTGATGAAGTTCGAGACTCTCTCATACCTCCCACCCCTCAACGACGAACAGCTATGCAAGGAAGTGGATTACCTTCTCCGCATGAAATGGATTCCTTGCTTGGAATTCACCAAGCTGTACCCATACCCCCACAGAGAGCACAACAGATCGCCAGGATACTACGACGGAAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACTCAGCCCAGGTGATTAAGGAGGTGCAAGAAGCCAGGACCGCGTACCCTGACGCCCACATCCGAATCATCGGATTCGACAATAACCGCCAAGTGCAATGCATCGCTTTCATTGCCTACAAGCCCAGCTGA 474 53.8 MVAPFTGLKSLSTFPGTRKANTDITSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQLCKEVDYLLRMKWIPCLEFTKLYPYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIKEVQEARTAYPDAHIRIIGFDNNRQVQCIAFIAYKPS* 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3623090 3624481 - Vvi17g324 Vvi17g324 779021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g324 157 SUPERFAMILY RuBisCO, small subunit 37 157 IPR036385 -
Vvi17g324 157 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN A, CHLOROPLASTIC 1 156 - -
Vvi17g324 157 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 1 23 IPR024680 -
Vvi17g324 157 PRINTS RuBisCO small subunit signature 25 43 IPR024681 -
Vvi17g324 157 PRINTS RuBisCO small subunit signature 46 72 IPR024681 -
Vvi17g324 157 PRINTS RuBisCO small subunit signature 74 89 IPR024681 -
Vvi17g324 157 PRINTS RuBisCO small subunit signature 96 125 IPR024681 -
Vvi17g324 157 PRINTS RuBisCO small subunit signature 130 156 IPR024681 -
Vvi17g324 157 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 156 IPR024681 -
Vvi17g324 157 SMART RuBisCO_small_2_a 47 156 IPR000894 -
Vvi17g324 157 CDD RuBisCO_small 47 156 IPR000894 -
Vvi17g324 157 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 46 157 IPR000894 -
Vvi17g324 157 Gene3D Ribulose bisphosphate carboxylase, small subunit 37 157 IPR036385 -
Vvi17g324 157 Pfam Ribulose bisphosphate carboxylase, small chain 48 156 IPR000894 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g324 K01602 rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] - vvi:100267942 337.421
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g324 . Blo16g00138 . . . Bpe13g00347 Bma06g00038 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0716 Cone16ag0580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006736 0 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38