Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g325 ATGCTTCCTAATTTAAATTTGCCAGTAAAAGCTTCAGTAGAGGAATTGAGGGCCTGCTTGATTGATGGTGCTGTTTTATGTCGGTTTTTGAACAGACTGAGACCTGGTTCTGTGAGTGAGGTGCGTGATTATGATCATTCTTCTGGGATGCGCTATGAAAATGTTAAAAAGTTTCTGGAGGCTTTGGACGCATTAGGGATGCCCGGGTTTGAAATTGCAGACCTGGAAAAGGGATCTATGAAGACTGTTTTGGAGTGCATTTTAACACTTAAAGCACACACTATACCAACTGTATTGGATGATCCTTCGCGTGGGCCTACACCATGTGGAGAAGACAGGCAAAAGAGTTTTTCAGAATCCAAATTTCAACGTGCTTTGCGTAGTCCTGTCAAGTCTGAGCCATCAGCTGCATTAATATATCATGTGGGACACAAGTTCCATGAGGTGTTTCAACTGAAACAAGGACGCTATGCGGATATTCCTGCTGCTAAGCTTACAGAAATGATGAAATCTAACAGTTTAGATAATGCCCCAACTCAGTCACTTTTGAGTGTTGTGAATGGAATTCTAGATGAAAGCGTTGAAAGGAAGAATGAAGAGATACCTCACCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACTCAAAACAATCTCTTTAAGTCTCGGGAAGAGAAATACCAGTCGAGAATCAGAGTACTTGAAACCCTTGCAACTGGGACTAATGATGAAAACCAGATTGTATTGAATCATCTCCAGCAGATAAAGATGAGGATGGAAATAGTGAGGTTTGACTGCCCACTGATATATCAAATTTCTCCTTTCATGATGGAAGTGGAAGGCGTATTCACAATTGATTCTATTCTTAATTTGCTGCAATTGTTGATCAAACATTTCTCAGAAATGGAAAAGCAAGGTATGGGAGATAAAGCAGAGTTTGAGAAGAGGTCAAGGGAACTTGAGCAGCTCCTAGCCGATTCAAGGAATAAGATAAATAAACTTGAGGCTTATTCTGGGTTAGAAGGCCAAAGGTGGGATAAGAAAGAGCAAAGCTACCTGAGACTTGTGAATTTTCTATTCAGTGCCTTGCAGGGATTGAGGTCCACTTCCGAGTCCATCAAGAAAGAAGTATTGGAAACACAGAAGAGCTATTCAGAGGATTTTAAATGCTTAGGAGTAAAGCTAAAAGCATTAGTAGATGCCTCTGAAAACTATCATGCAGTTCTTGCTGAAAATAGGAGACTTTATAATGAGGTTCAAGATTTAAAAGGAAACATTAGGGTGTATTGCCGGATAAGGCCATTTCTCCGTGGGCAGAATGGAAAGCAGACAACCATAGAATATATTGGTGAAGATGGGGAGCTCGGTATTGTGAATCCCTCAAAACAAGGAAAAGACAGTCATCGGTTGTTCAAATTCAATAAGGTCTATGGCCCAGCTGCTACTCAAGCTGAGGTGTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGACTGGCCCCAATGCAGCATCCAAGGAGGAATGGGGTGTCAATTATCGTGCACTAAGTGACCTCTTTGAGATCACTCAAAGCAGGAGAAGCTCATTTATGTATGAAATTGGAGTTCAAATGGTTGAAATATACAATGAACAAGTGCGTGATTTACTATCAAGTGATATGAAAAATAGTTTTCATCCCCATGGGTTAGCTGTTCCTGATGCTACCATGCTCCCAGTCAAATCAACCTCAGATGTAATGGAATTAATGGACATTGGACAAAAGAATAGATCTGTAGGTGCCACTGCTATGAATGAAAGAAGTAGCCGCTCCCACAGTATTGTAACTATTCATGCTTGGGGGACGGATTTGAAGACTGGTGCTTCTTTGCGTGGCAGTCTTCACTTGGTGGATCTTGCAGGAAGTGAAAGGGTAGATCGCTCTGAGGTAACTGGAGAGAGACTTAGGGAAGCACAACATATAAACAAATCGCTATCTGCCCTTGGAGATGTTATCTTTGCTCTTGCCCAGAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAAGTCCTTCAGAGTTCTCTTGGTGGTCAAGCAAAGACTCTTATGTTTGTGCAGCTTAATCCTGATGTGAATTCATTTTCTGAAACTGCAAGTACTTTGAAATTTGCTGAGAGGGTTTCTGGAGTCGAGCTAGGTGCTGCACGGAGTAGCAAAGAGGGCAGGGACGTTAAGGAATTAATGGATCAGGTGGCATCTCTCAAAGACACAATTGCCAAAAAAGATGAGGAGATCGAACGGTTGCAACTACTTAAAGATCTCAAAAATGTACATCCTGGTCTCAACTGTGAGAGAAGTGGGAAAGGCTTAGGACCAGCTGAGAGAGCAGCTTCTGATCAGGACAACAGTTCAGAATACAGTGATAAGCATTCTGATGCTGATTCCCAGCAGTCCATGGAAGACTTTAAACAACCAAATGAATCCCTTCGGAAATCAAAGCTTGCCGGTGGGGACATAGGTCAGAATAATCCTGCAGATGCTTCGACCTTAGGATTTGGGGAGACAGATTGTGACGAGAGATCAAGTGATACATCTGATGGTGGTTTTCCTATGCGAACAGAAAATAATGGCCCTGCTCAATCTAAAGCATCAGAGACCACAGAGAAGTCTAAACCAGCCTCTAGAATAACAAGACCACCGCAAAGAACATTGCGAACTTCATCTCCTCCACCATCACATCTTAAGGATTCTCCAAAGGCGGCAACAGGTATGTAA 2865 42.13 MLPNLNLPVKASVEELRACLIDGAVLCRFLNRLRPGSVSEVRDYDHSSGMRYENVKKFLEALDALGMPGFEIADLEKGSMKTVLECILTLKAHTIPTVLDDPSRGPTPCGEDRQKSFSESKFQRALRSPVKSEPSAALIYHVGHKFHEVFQLKQGRYADIPAAKLTEMMKSNSLDNAPTQSLLSVVNGILDESVERKNEEIPHRVACLLRKVVQEIERRISTQAEHLRTQNNLFKSREEKYQSRIRVLETLATGTNDENQIVLNHLQQIKMRMEIVRFDCPLIYQISPFMMEVEGVFTIDSILNLLQLLIKHFSEMEKQGMGDKAEFEKRSRELEQLLADSRNKINKLEAYSGLEGQRWDKKEQSYLRLVNFLFSALQGLRSTSESIKKEVLETQKSYSEDFKCLGVKLKALVDASENYHAVLAENRRLYNEVQDLKGNIRVYCRIRPFLRGQNGKQTTIEYIGEDGELGIVNPSKQGKDSHRLFKFNKVYGPAATQAEVFSDTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMTGPNAASKEEWGVNYRALSDLFEITQSRRSSFMYEIGVQMVEIYNEQVRDLLSSDMKNSFHPHGLAVPDATMLPVKSTSDVMELMDIGQKNRSVGATAMNERSSRSHSIVTIHAWGTDLKTGASLRGSLHLVDLAGSERVDRSEVTGERLREAQHINKSLSALGDVIFALAQKSSHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSFSETASTLKFAERVSGVELGAARSSKEGRDVKELMDQVASLKDTIAKKDEEIERLQLLKDLKNVHPGLNCERSGKGLGPAERAASDQDNSSEYSDKHSDADSQQSMEDFKQPNESLRKSKLAGGDIGQNNPADASTLGFGETDCDERSSDTSDGGFPMRTENNGPAQSKASETTEKSKPASRITRPPQRTLRTSSPPPSHLKDSPKAATGM* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3626430 3634245 - Vvi17g325 Vvi17g325 779022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g325 954 SUPERFAMILY Calponin-homology domain, CH-domain 12 95 IPR036872 -
Vvi17g325 954 Pfam Calponin homology (CH) domain 10 93 IPR001715 GO:0005515
Vvi17g325 954 Gene3D - 1 95 IPR036872 -
Vvi17g325 954 SMART ch_5 8 93 IPR001715 GO:0005515
Vvi17g325 954 MobiDBLite consensus disorder prediction 896 917 - -
Vvi17g325 954 ProSiteProfiles Calponin homology (CH) domain profile. 1 95 IPR001715 GO:0005515
Vvi17g325 954 SMART kinesin_4 437 768 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g325 954 Gene3D Kinesin motor domain 381 762 IPR036961 -
Vvi17g325 954 PANTHER KINESIN-4-LIKE ISOFORM X1 816 911 - -
Vvi17g325 954 ProSitePatterns Kinesin motor domain signature. 660 671 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi17g325 954 PANTHER KINESIN-4-LIKE ISOFORM X1 1 804 - -
Vvi17g325 954 MobiDBLite consensus disorder prediction 831 847 - -
Vvi17g325 954 CDD CH 5 90 IPR001715 GO:0005515
Vvi17g325 954 PRINTS Kinesin heavy chain signature 710 731 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g325 954 PRINTS Kinesin heavy chain signature 630 647 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g325 954 PRINTS Kinesin heavy chain signature 661 679 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g325 954 PRINTS Kinesin heavy chain signature 514 535 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g325 954 Coils Coil 324 351 - -
Vvi17g325 954 Coils Coil 774 801 - -
Vvi17g325 954 MobiDBLite consensus disorder prediction 808 954 - -
Vvi17g325 954 PANTHER KINESIN-LIKE PROTEIN KLP-3 816 911 - -
Vvi17g325 954 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 804 - -
Vvi17g325 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 798 IPR027417 -
Vvi17g325 954 Pfam Kinesin motor domain 445 758 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g325 954 MobiDBLite consensus disorder prediction 923 943 - -
Vvi17g325 954 ProSiteProfiles Kinesin motor domain profile. 439 760 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g325 K10406 KIFC2_3; kinesin family member C2/C3 - vvi:100254382 1230.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g325 . . Bda06g00804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0285 . . . . . . Blo15g00073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54